RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CARNMT1Q8N4J0 409 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 SPIRE2Q8WWL2 714 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 ASB7Q9H672 318 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 NMRK2Q9NPI5 230 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 KCNMA1Q12791 1236 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 C1QTNF7Q9BXJ2 289 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 CD248Q9HCU0 757 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 VPS28Q9UK41 221 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 A0A087X0B3 334 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 PMPCBO75439 489 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 ALBP02768 609 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 NQO1P15559 274 aaKnown RBP19.7■□□□□ 0.74
UPF1-201ENST00000262803 VCAM1P19320 739 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 MRPS35P82673 323 aaKnown RBP19.7■□□□□ 0.74
UPF1-201ENST00000262803 C9orf131Q5VYM1 1079 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 AGO4Q9HCK5 861 aaKnown RBP19.7■□□□□ 0.74
UPF1-201ENST00000262803 IL17RBQ9NRM6 502 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 ZNF229Q9UJW7 825 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 RAB21Q9UL25 225 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 CKBP12277 381 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 VHLP40337 213 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 SCTRP47872 440 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 DUSP9Q99956 384 aaKnown RBP19.69■□□□□ 0.74
UPF1-201ENST00000262803 ENO4A6NNW6 628 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 FCGR1AP12314 374 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 KRT20P35900 424 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 CYP24A1Q07973 514 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 KRR1Q13601 381 aaKnown RBP19.69■□□□□ 0.74
UPF1-201ENST00000262803 ZCCHC8Q6NZY4 707 aaKnown RBP19.69■□□□□ 0.74
UPF1-201ENST00000262803 SV2AQ7L0J3 742 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 RIN3Q8TB24 985 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 REPS1Q96D71 796 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 SGF29Q96ES7 293 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 SHCBP1LQ9BZQ2 653 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 HAO1Q9UJM8 370 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 CAB39Q9Y376 341 aaPredicted RBP19.69■□□□□ 0.74
UPF1-201ENST00000262803 COL3A1P02461 1466 aaPredicted RBP19.69■□□□□ 0.74
UPF1-201ENST00000262803 CYP2A6P11509 494 aaPredicted RBP19.69■□□□□ 0.74
UPF1-201ENST00000262803 VEGFAP15692 232 aaPredicted RBP19.69■□□□□ 0.74
UPF1-201ENST00000262803 PTENP60484 403 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 C1QBPQ07021 282 aaKnown RBP19.69■□□□□ 0.74
UPF1-201ENST00000262803 STARD8Q92502 1023 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 PNMA5Q96PV4 448 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 ENOPH1Q9UHY7 261 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 SLC24A2Q9UI40 661 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 CYTH3O43739 400 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 AKR1A1P14550 325 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 EPB42P16452 691 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 C4BPBP20851 252 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 DSG3P32926 999 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 MAP3K7CLP57077 242 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 NAB1Q13506 487 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 FBXO47Q5MNV8 452 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 LAYNQ6UX15 382 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 IMPAD1Q9NX62 359 aa19.69■□□□□ 0.74
UPF1-201ENST00000262803 ZBTB39O15060 712 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 GLP2RO95838 553 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 MPOP05164 745 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 GPC1P35052 558 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 SOX11P35716 441 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 RANBP1P43487 201 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 CYLC2Q14093 348 aaPredicted RBP19.68■□□□□ 0.74
UPF1-201ENST00000262803 CCNG2Q16589 344 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 DDI1Q8WTU0 396 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 CYGBQ8WWM9 190 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 SYBUQ9NX95 663 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 SLC12A8A0AV02 714 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 DDTLA6NHG4 134 aaPredicted RBP19.68■□□□□ 0.74
UPF1-201ENST00000262803 CHI3L1P36222 383 aaPredicted RBP19.68■□□□□ 0.74
UPF1-201ENST00000262803 PCBP1Q15365 356 aaKnown RBP eCLIP19.68■□□□□ 0.742e-9■■■■■ 36.2
UPF1-201ENST00000262803 C11orf63Q6NUN7 778 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 MCCC1Q96RQ3 725 aaPredicted RBP19.68■□□□□ 0.74
UPF1-201ENST00000262803 TMEM121Q9BTD3 319 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 TBC1D23Q9NUY8 699 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 AP4E1Q9UPM8 1137 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 TK2O00142 265 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 UBTFL6P0CB48 400 aaPredicted RBP19.68■□□□□ 0.74
UPF1-201ENST00000262803 IL1R1P14778 569 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 CYP2A7P20853 494 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 TKTP29401 623 aaKnown RBP19.68■□□□□ 0.74
UPF1-201ENST00000262803 FAM172AQ8WUF8 416 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 EFCAB1Q9HAE3 211 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 DLGAP2Q9P1A6 1054 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 AK9Q5TCS8 1911 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 ZSCAN5CA6NGD5 496 aaPredicted RBP19.68■□□□□ 0.74
UPF1-201ENST00000262803 CCR1P32246 355 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 GLRA4Q5JXX5 417 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 SLC30A9Q6PML9 568 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 SPOCD1Q6ZMY3 1216 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 DENND5BQ6ZUT9 1274 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 VCPIP1Q96JH7 1222 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 SERPINB11Q96P15 392 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 SEMA4AQ9H3S1 761 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 EPS8L2Q9H6S3 715 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 TRHDEQ9UKU6 1024 aa19.68■□□□□ 0.74
UPF1-201ENST00000262803 AMHR2Q16671 573 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 FKBP1CQ5VVH2 108 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 PAFAH2Q99487 392 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 KLHL28Q9NXS3 571 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 UMODL1Q5DID0 1318 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms