RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 CCDC26Q8TAB7 109 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 MBD1Q9UIS9 605 aaPredicted RBP23.28■■□□□ 1.32
VTI1B-201ENST00000216456 RASAL2Q9UJF2 1139 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 DNMT3LQ9UJW3 386 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 MAN1B1Q9UKM7 699 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 BCLAF3A2AJT9 711 aaKnown RBP23.27■■□□□ 1.32
VTI1B-201ENST00000216456 BMP6P22004 513 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 FKBP3Q00688 224 aaKnown RBP23.27■■□□□ 1.32
VTI1B-201ENST00000216456 EFEMP1Q12805 493 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 GOLGA7BQ2TAP0 167 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 COBLL1Q53SF7 1204 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 STPG1Q5TH74 334 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 ARMCX6Q7L4S7 300 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 OLIG1Q8TAK6 271 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 SLC35C1Q96A29 364 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 TSG101Q99816 390 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 DUSP9Q99956 384 aaKnown RBP23.27■■□□□ 1.32
VTI1B-201ENST00000216456 PCDHGA5Q9Y5G8 931 aa23.27■■□□□ 1.32
VTI1B-201ENST00000216456 MYO18AQ92614 2054 aaKnown RBP23.26■■□□□ 1.31
VTI1B-201ENST00000216456 SLC16A3O15427 465 aaKnown RBP23.26■■□□□ 1.31
VTI1B-201ENST00000216456 GADD45BO75293 160 aaPredicted RBP23.26■■□□□ 1.31
VTI1B-201ENST00000216456 RHOBTB1O94844 696 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 CAVIN2O95810 425 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 TRIM21P19474 475 aaKnown RBP23.26■■□□□ 1.31
VTI1B-201ENST00000216456 CUL2Q13617 745 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 BECN1Q14457 450 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 EOGTQ5NDL2 527 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 ARHGAP17Q68EM7 881 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 GRAMD4Q6IC98 578 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 KAT5Q92993 513 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 CCDC34Q96HJ3 373 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 VPS45Q9NRW7 570 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 BCCIPQ9P287 314 aaKnown RBP eCLIP23.26■■□□□ 1.31
VTI1B-201ENST00000216456 LSM7Q9UK45 103 aaKnown RBP23.26■■□□□ 1.31
VTI1B-201ENST00000216456 COQ4Q9Y3A0 265 aa23.26■■□□□ 1.31
VTI1B-201ENST00000216456 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 CACNG3O60359 315 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 STX10O60499 249 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 SMC2O95347 1197 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 CISD3P0C7P0 127 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 P2RY2P41231 377 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 PLA2G4AP47712 749 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 DHPSP49366 369 aaPredicted RBP23.25■■□□□ 1.31
VTI1B-201ENST00000216456 NUCB2P80303 420 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 PDE4CQ08493 712 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 KLHL10Q6JEL2 608 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 KIAA1211LQ6NV74 962 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 BHLHA9Q7RTU4 235 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 TMEFF1Q8IYR6 380 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 PGBD3Q8N328 593 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 DEFB119Q8N690 84 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 UBR7Q8N806 425 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 UBA3Q8TBC4 463 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 ULBP1Q9BZM6 244 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 SLC6A17Q9H1V8 727 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 ARMCX3Q9UH62 379 aaPredicted RBP23.25■■□□□ 1.31
VTI1B-201ENST00000216456 TSPAN16Q9UKR8 245 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 RAD54BQ9Y620 910 aa23.25■■□□□ 1.31
VTI1B-201ENST00000216456 THADAQ6YHU6 1953 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 TM4SF5O14894 197 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 PTGER3P43115 390 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 TKTL1P51854 596 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 MAP7D1Q3KQU3 841 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 RAB41Q5JT25 222 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 KLHDC10Q6PID8 442 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 ANKRD52Q8NB46 1076 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 CNTNAP3BQ96NU0 1288 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 CNTNAP3Q9BZ76 1288 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 POLMQ9NP87 494 aaPredicted RBP23.24■■□□□ 1.31
VTI1B-201ENST00000216456 CD93Q9NPY3 652 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 MARK1Q9P0L2 795 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 CLEC4EQ9ULY5 219 aa23.24■■□□□ 1.31
VTI1B-201ENST00000216456 A0A1W2PQF6 199 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 WASH3PC4AMC7 463 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 BIN1O00499 593 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 ALDH1A2O94788 518 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 RALAP11233 206 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 HOXB2P14652 356 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 CD19P15391 556 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 GABRG2P18507 467 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 IL31Q6EBC2 164 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 TFAP2BQ92481 460 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 TIGD1Q96MW7 591 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 ZSWIM1Q9BR11 485 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 EDEM2Q9BV94 578 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 CACNA2D2Q9NY47 1150 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 CLIC5Q9NZA1 410 aa23.23■■□□□ 1.31
VTI1B-201ENST00000216456 ATXN2Q99700 1313 aaKnown RBP23.23■■□□□ 1.31
VTI1B-201ENST00000216456 SLC12A8A0AV02 714 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 LNP1A1A4G5 178 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 RNF225M0QZC1 329 aaPredicted RBP23.22■■□□□ 1.31
VTI1B-201ENST00000216456 PIK3R2O00459 728 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 GABBR2O75899 941 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 ADRB1P08588 477 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 CORO1AP31146 461 aaKnown RBP23.22■■□□□ 1.31
VTI1B-201ENST00000216456 FMO5P49326 533 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 LIMK1P53667 647 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 YWHAGP61981 247 aaKnown RBP eCLIP23.22■■□□□ 1.31
VTI1B-201ENST00000216456 LRRC63Q05C16 580 aa23.22■■□□□ 1.31
VTI1B-201ENST00000216456 GOLGA8FQ08AF8 430 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms