RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 SH3BP5O60239 455 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 ZNF217O75362 1048 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 TRIM16O95361 564 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 CCDC130P13994 396 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 MAOBP27338 520 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 HOXD13P35453 343 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 CASP4P49662 377 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 STK38Q15208 465 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 ZNF699Q32M78 642 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 FAM26FQ5R3K3 315 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 ACOT1Q86TX2 421 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 PNPLA1Q8N8W4 532 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 XXYLT1Q8NBI6 393 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 XPO6Q96QU8 1125 aaKnown RBP15.89■□□□□ 0.13
SYNE2-228ENST00000639659 TRIM9Q9C026 710 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 FOXD4L1Q9NU39 408 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 LSM7Q9UK45 103 aaKnown RBP15.89■□□□□ 0.13
SYNE2-228ENST00000639659 HCN2Q9UL51 889 aa15.89■□□□□ 0.13
SYNE2-228ENST00000639659 DSPP15924 2871 aaKnown RBP15.89■□□□□ 0.13
SYNE2-228ENST00000639659 WDFY3Q8IZQ1 3526 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 DMXL2Q8TDJ6 3036 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 A0A1W2PQF6 199 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 MEI4A8MW99 385 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 UPK3BL1B0FP48 263 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 UPK3BL2E5RIL1 263 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 EIF3DO15371 548 aaKnown RBP eCLIP15.88■□□□□ 0.13
SYNE2-228ENST00000639659 TLR5O60602 858 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 CD59P13987 128 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 TYRP14679 529 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 TRIP6Q15654 476 aaKnown RBP15.88■□□□□ 0.13
SYNE2-228ENST00000639659 ZNF423Q2M1K9 1284 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 ZNF667Q5HYK9 610 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 TOGARAM2Q6ZUX3 1019 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 ZNF516Q92618 1163 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 TNIP3Q96KP6 325 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 LRRC27Q9C0I9 530 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 MIR1-1HGQ9H1L0 117 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 TNMDQ9H2S6 317 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 FAM49BQ9NUQ9 324 aa15.88■□□□□ 0.13
SYNE2-228ENST00000639659 PRRT4C9JH25 899 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 TGFB1I1O43294 461 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 EXOC3O60645 756 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 TBX18O95935 607 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 GNSP15586 552 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 SYT1P21579 422 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 ADORA2BP29275 332 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 PGFP49763 221 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 MAP3K7CLP57077 242 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 GOLGA8FQ08AF8 430 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 GOLGA8DPQ0D2H9 430 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 SCAPQ12770 1279 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 SYCP2LQ5T4T6 812 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 CACUL1Q86Y37 369 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 NAXDQ8IW45 347 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 KCNV2Q8TDN2 545 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.87■□□□□ 0.13
SYNE2-228ENST00000639659 PLK2Q9NYY3 685 aa15.87■□□□□ 0.13
SYNE2-228ENST00000639659 A0A1W2PQD8 194 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 WASH3PC4AMC7 463 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 TAF4O00268 1085 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 MDM4O15151 490 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 FTH1P19P0C7X4 201 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 CASP1P29466 404 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 ATICP31939 592 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 DGKGP49619 791 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 TUBP50607 506 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 AMPD3Q01432 767 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 GRIK2Q13002 908 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 SLC39A14Q15043 492 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 PAQR9Q6ZVX9 377 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 RAB44Q7Z6P3 723 aaPredicted RBP15.86■□□□□ 0.13
SYNE2-228ENST00000639659 PROSER1Q86XN7 944 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 ZCCHC9Q8N567 271 aaKnown RBP15.86■□□□□ 0.13
SYNE2-228ENST00000639659 ZNF507Q8TCN5 953 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 SLC2A14Q8TDB8 520 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 SMOQ99835 787 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 SDCBP2Q9H190 292 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 XYLT2Q9H1B5 865 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 BLZF1Q9H2G9 400 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 TLR8Q9NR97 1041 aaKnown RBP15.86■□□□□ 0.13
SYNE2-228ENST00000639659 SUSD2Q9UGT4 822 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 NUDT5Q9UKK9 219 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 NBEAQ8NFP9 2946 aa15.86■□□□□ 0.13
SYNE2-228ENST00000639659 CYP26A1O43174 497 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 CACNG3O60359 315 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 BEST1O76090 585 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 FAM163BP0C2L3 166 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 NCOA4Q13772 614 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 HNRNPDQ14103 355 aaKnown RBP15.85■□□□□ 0.13
SYNE2-228ENST00000639659 STARD3Q14849 445 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 WDR45BQ5MNZ6 344 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 EPM2AIP1Q7L775 607 aaPredicted RBP15.85■□□□□ 0.13
SYNE2-228ENST00000639659 FUKQ8N0W3 1084 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 SETD7Q8WTS6 366 aaKnown RBP15.85■□□□□ 0.13
SYNE2-228ENST00000639659 MRGPRX1Q96LB2 322 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 FBXO44Q9H4M3 255 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 FAM124BQ9H5Z6 455 aaPredicted RBP15.85■□□□□ 0.13
SYNE2-228ENST00000639659 SLC39A2Q9NP94 309 aa15.85■□□□□ 0.13
SYNE2-228ENST00000639659 DNAAF2Q9NVR5 837 aaKnown RBP15.85■□□□□ 0.13
SYNE2-228ENST00000639659 WDR35Q9P2L0 1181 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms