RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 ZNF41P51814 821 aaPredicted RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 RAD23AP54725 363 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 VAMP2P63027 116 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 PPP2R2AP63151 447 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 KCNJ10P78508 379 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 BASP1P80723 227 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 ARHGAP8P85298 464 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TFAP4Q01664 338 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 MC1RQ01726 317 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CREMQ03060 361 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 KRT17Q04695 432 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 SPAG1Q07617 926 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 DDR1Q08345 913 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 DMPKQ09013 629 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CBX3Q13185 183 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TUBA3CQ13748 450 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 DOC2AQ14183 400 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 NR1I3Q14994 352 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 UBE3CQ15386 1083 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 DLGAP5Q15398 846 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TRADDQ15628 312 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ZYXQ15942 572 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 KYNUQ16719 465 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TIGD6Q17RP2 521 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 FUT11Q495W5 492 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 SV2CQ496J9 727 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 RBM20Q5T481 1227 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 STXBP5Q5T5C0 1151 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 MAP3K21Q5TCX8 1036 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 DRICH1Q6PGQ1 229 aaPredicted RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 CLEC2AQ6UVW9 174 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 LRIG3Q6UXM1 1119 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ATF7IPQ6VMQ6 1270 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 NSMFQ6X4W1 530 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 DENND5BQ6ZUT9 1274 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TMTC3Q6ZXV5 915 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 LIMS2Q7Z4I7 341 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TMEM200AQ86VY9 491 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 LIX1LQ8IVB5 337 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 FAM114A1Q8IWE2 563 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CDH26Q8IXH8 852 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CNTROBQ8N137 903 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 MIER2Q8N344 545 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ARL14Q8N4G2 192 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 HDDC3Q8N4P3 179 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 DPP10Q8N608 796 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 NIPA2Q8N8Q9 360 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ARRDC4Q8NCT1 418 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 LILRB4Q8NHJ6 448 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 SPPL3Q8TCT6 385 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 AUTS2Q8WXX7 1259 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 BRI3BPQ8WY22 251 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 KLHL6Q8WZ60 621 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ST8SIA4Q92187 359 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 OSBP2Q969R2 916 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 C1GALT1C1Q96EU7 318 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 MVB12AQ96EY5 273 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CALML4Q96GE6 196 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TMEM169Q96HH4 297 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 FEM1CQ96JP0 617 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CNOT6LQ96LI5 555 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 NUDCD1Q96RS6 583 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 JMJD8Q96S16 334 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CITED2Q99967 270 aaPredicted RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 PDCD2LQ9BRP1 358 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 LRFN3Q9BTN0 628 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 FUT8Q9BYC5 575 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 MTMR12Q9C0I1 747 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 BTBD1Q9H0C5 482 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 INTS2Q9H0H0 1204 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 XKR8Q9H6D3 395 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 EPS8L2Q9H6S3 715 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 MID1IP1Q9NPA3 183 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 OBP2BQ9NPH6 170 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 RPRD1BQ9NQG5 326 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 KCND1Q9NSA2 647 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ZBTB40Q9NUA8 1239 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 SPTLC3Q9NUV7 552 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TMEM160Q9NX00 188 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 NINJ2Q9NZG7 142 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 MTRF1LQ9UGC7 380 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 SRPK3Q9UPE1 567 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 LIMCH1Q9UPQ0 1083 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CAMK2AQ9UQM7 478 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 PIN4Q9Y237 131 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 TMEM5Q9Y2B1 443 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 WDR37Q9Y2I8 494 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 PCDHB14Q9Y5E9 798 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 SNX13Q9Y5W8 968 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 SLC12A7Q9Y666 1083 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ATP8B3O60423 1300 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ZNF335Q9H4Z2 1342 aaPredicted RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 KDRP35968 1356 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 RNF103-CHMP3A0A140T963 221 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 LOC100653049A0A140TA62 436 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 A0A1W2PQ45 241 aaPredicted RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 A0A1W2PQY0 241 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SSU72P8A0A1W2PR75 194 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms