RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 FBXO44Q9H4M3 255 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 MRPL17Q9NRX2 175 aaKnown RBP19.24■□□□□ 0.67
CLN3-254ENST00000637050 RRN3Q9NYV6 651 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 CALCOCO1Q9P1Z2 691 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 HSFX1Q9UBD0 423 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 SCML2Q9UQR0 700 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 TCRBV7S2A1N4TA0A589 114 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 LRRD1A4D1F6 860 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 PI4K2BG5E9Z4 385 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 CAPN9O14815 690 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 LILRB3O75022 631 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 SOAT2O75908 522 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 RALAP11233 206 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 NCAM1P13591 858 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 CETN2P41208 172 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 PITX1P78337 314 aaPredicted RBP19.23■□□□□ 0.67
CLN3-254ENST00000637050 RAB33AQ14088 237 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 SIX1Q15475 284 aaPredicted RBP19.23■□□□□ 0.67
CLN3-254ENST00000637050 MFSD7Q6UXD7 560 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 SPOCD1Q6ZMY3 1216 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 GPR161Q8N6U8 529 aaKnown RBP19.23■□□□□ 0.67
CLN3-254ENST00000637050 CEP295NLQ96MC4 621 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 HERPUD2Q9BSE4 406 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 OSBPL8Q9BZF1 889 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLN3-254ENST00000637050 FNIP2Q9P278 1114 aa19.23■□□□□ 0.67
CLN3-254ENST00000637050 FAM92AA1XBS5 289 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 DYNC1I1O14576 645 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 CTSAP10619 480 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 ATF2P15336 505 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 KDELR1P24390 212 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 CDKN2BP42772 138 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 YWHAGP61981 247 aaKnown RBP eCLIP19.22■□□□□ 0.67
CLN3-254ENST00000637050 IFRD2Q12894 506 aaPredicted RBP19.22■□□□□ 0.67
CLN3-254ENST00000637050 KLF1Q13351 362 aaPredicted RBP19.22■□□□□ 0.67
CLN3-254ENST00000637050 PPP2R5EQ16537 467 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 TAZQ16635 292 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 ODF2Q5BJF6 829 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 SCYL2Q6P3W7 929 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 DENND5BQ6ZUT9 1274 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 ADAT2Q7Z6V5 191 aaKnown RBP19.22■□□□□ 0.67
CLN3-254ENST00000637050 STKLD1Q8NE28 680 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 MAIP1Q8WWC4 291 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 AUTS2Q8WXX7 1259 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 PGAP3Q96FM1 320 aaPredicted RBP19.22■□□□□ 0.67
CLN3-254ENST00000637050 RXFP1Q9HBX9 757 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 COMMD8Q9NX08 183 aa19.22■□□□□ 0.67
CLN3-254ENST00000637050 PLXNA3P51805 1871 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 GOLGA6L10A0A0M3HER8 536 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 M0QYT0 321 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 MDM4O15151 490 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 RTN3O95197 1032 aaPredicted RBP19.21■□□□□ 0.67
CLN3-254ENST00000637050 BMPR1AP36894 532 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 TUFMP49411 452 aaKnown RBP19.21■□□□□ 0.67
CLN3-254ENST00000637050 ARSEP51690 589 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 ATXN1P54253 815 aaKnown RBP19.21■□□□□ 0.67
CLN3-254ENST00000637050 USP46P62068 366 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 CREMQ03060 361 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 TFDP3Q5H9I0 405 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 COL13A1Q5TAT6 717 aaPredicted RBP19.21■□□□□ 0.67
CLN3-254ENST00000637050 SCD5Q86SK9 330 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 MON1AQ86VX9 555 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 PRELID2Q8N945 189 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 HSPH1Q92598 858 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 EDEM1Q92611 657 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 KRT12Q99456 494 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 SNRNP25Q9BV90 132 aaKnown RBP19.21■□□□□ 0.67
CLN3-254ENST00000637050 EPC1Q9H2F5 836 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 ANKZF1Q9H8Y5 726 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 ABCC13Q9NSE7 274 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 MTUS1Q9ULD2 1270 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 SSX2IPQ9Y2D8 614 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 EFR3BQ9Y2G0 817 aa19.21■□□□□ 0.67
CLN3-254ENST00000637050 hCG_1818297A0A087WSY0 165 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 RHOXF2BP0C7M4 288 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 ATF6P18850 670 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 DNAJB2P25686 324 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 RDXP35241 583 aaKnown RBP19.2■□□□□ 0.66
CLN3-254ENST00000637050 LLGL1Q15334 1064 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 CYP1B1Q16678 543 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 GLE1Q53GS7 698 aaKnown RBP19.2■□□□□ 0.66
CLN3-254ENST00000637050 C9orf50Q5SZB4 431 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 ERMARDQ5T6L9 678 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 KCTD6Q8NC69 237 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 SLC7A14Q8TBB6 771 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 GPR152Q8TDT2 470 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 RHOXF2Q9BQY4 288 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 LRRC1Q9BTT6 524 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 HEMGNQ9BXL5 484 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.2■□□□□ 0.66
CLN3-254ENST00000637050 LZTS1Q9Y250 596 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 RWDD3Q9Y3V2 267 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 LINC01553A4QN01 128 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 CCDC85CA6NKD9 419 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 SEC24AO95486 1093 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 YWHAQP27348 245 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 PGFP49763 221 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 DEUP1Q05D60 604 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 KLHL7Q8IXQ5 586 aa19.2■□□□□ 0.66
CLN3-254ENST00000637050 ARHGAP18Q8N392 663 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms