RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MCOLN1Q9GZU1 580 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 RAB17Q9H0T7 212 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 RC3H2Q9HBD1 1191 aaKnown RBP17.6■□□□□ 0.41
CLN3-252ENST00000636907 HOMER3Q9NSC5 361 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 RASAL2Q9UJF2 1139 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 STAP1Q9ULZ2 295 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 EFR3BQ9Y2G0 817 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 TNFRSF10BO14763 440 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 CAPN9O14815 690 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 MDM4O15151 490 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 DAPK3O43293 454 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 LTFP02788 710 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 EN2P19622 333 aaPredicted RBP17.59■□□□□ 0.41
CLN3-252ENST00000636907 SLC5A3P53794 718 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 ARPP19P56211 112 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 DPYSL3Q14195 570 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 DUPD1Q68J44 220 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 PRSS55Q6UWB4 352 aaPredicted RBP17.59■□□□□ 0.41
CLN3-252ENST00000636907 UBE2Q1Q7Z7E8 422 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 SCML4Q8N228 414 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 CCDC185Q8N715 623 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 IGSF21Q96ID5 467 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 VN1R3Q9BXE9 311 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 FUT8Q9BYC5 575 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 TRIM31Q9BZY9 425 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 DPH5Q9H2P9 285 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 PCDHB5Q9Y5E4 795 aa17.59■□□□□ 0.41
CLN3-252ENST00000636907 H7C4K7 107 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 M0QYT0 321 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 CST8O60676 142 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 EFCAB14O75071 495 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 SASH3O75995 380 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 ECEL1O95672 775 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 ECHS1P30084 290 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 EPHB4P54760 987 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 DYNLT1P63172 113 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 IFRD2Q12894 506 aaPredicted RBP17.58■□□□□ 0.41
CLN3-252ENST00000636907 MMRN1Q13201 1228 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 CUL1Q13616 776 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 KRT81Q14533 505 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 ERMARDQ5T6L9 678 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 BBS12Q6ZW61 710 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 ANKS3Q6ZW76 656 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 FAM131BQ86XD5 332 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 RFX6Q8HWS3 928 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 SLCO2A1Q92959 643 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 HAUS1Q96CS2 278 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 GDAP1L1Q96MZ0 367 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 PCDH18Q9HCL0 1135 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 IL23AQ9NPF7 189 aa17.58■□□□□ 0.41
CLN3-252ENST00000636907 LIASO43766 372 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 NCAM1P13591 858 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 CPB1P15086 417 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 GPR15P49685 360 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 PDK2Q15119 407 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 SPOUT1Q5T280 376 aaKnown RBP17.58■□□□□ 0.4
CLN3-252ENST00000636907 KCNT2Q6UVM3 1135 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 VSTM1Q6UX27 236 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 RNF168Q8IYW5 571 aaPredicted RBP17.58■□□□□ 0.4
CLN3-252ENST00000636907 ATAD1Q8NBU5 361 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 C8orf48Q96LL4 319 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 FAM114A2Q9NRY5 505 aa17.58■□□□□ 0.4
CLN3-252ENST00000636907 COL4A4P53420 1690 aaPredicted RBP17.57■□□□□ 0.4
CLN3-252ENST00000636907 SYNJ2BP-COX16A0A087WUM0 186 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 TRIM66O15016 1216 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 BAIAP3O94812 1187 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 IL4RP24394 825 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 RDXP35241 583 aaKnown RBP17.57■□□□□ 0.4
CLN3-252ENST00000636907 MAGEA11P43364 429 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 GPR17Q13304 367 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 BTG3Q14201 252 aaPredicted RBP17.57■□□□□ 0.4
CLN3-252ENST00000636907 DDR2Q16832 855 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 USP41Q3LFD5 358 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 SDHAF4Q5VUM1 108 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 BSPRYQ5W0U4 402 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 C16orf59Q7L2K0 433 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 OTOP2Q7RTS6 562 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 MAP7D3Q8IWC1 876 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 TTC9BQ8N6N2 239 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 STKLD1Q8NE28 680 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 ATL2Q8NHH9 583 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 SLC7A14Q8TBB6 771 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 ADAM32Q8TC27 787 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 FAM71BQ8TC56 605 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 EDEM1Q92611 657 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 CCDC114Q96M63 670 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 MAGEB5Q9BZ81 275 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 NEUROG2Q9H2A3 272 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 COX16Q9P0S2 106 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 DNPEPQ9ULA0 475 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 AP4E1Q9UPM8 1137 aa17.57■□□□□ 0.4
CLN3-252ENST00000636907 MKI67P46013 3256 aaKnown RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 MTMR11A4FU01 709 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 ATP8B1O43520 1251 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 VNN2O95498 520 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 FAM153BP0C7A2 387 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 L1CAMP32004 1257 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 TNNT3P45378 269 aaPredicted RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 KRT17Q04695 432 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 DEUP1Q05D60 604 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms