RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 BEST1O76090 585 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 PSMC2P35998 433 aaKnown RBP19.45■□□□□ 0.7
CLN3-241ENST00000635861 ATP5C1P36542 298 aaKnown RBP19.45■□□□□ 0.7
CLN3-241ENST00000635861 P2RY2P41231 377 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 PSEN1P49768 467 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 DPYDQ12882 1025 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 CLEC20AQ6ZU45 233 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 CYP2U1Q7Z449 544 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 TADA2BQ86TJ2 420 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 BBS7Q8IWZ6 715 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 ZNF276Q8N554 614 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 HMGXB4Q9UGU5 601 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 STARD13Q9Y3M8 1113 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 CEP295Q9C0D2 2601 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 TBC1D3BA6NDS4 549 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 SCAMP3O14828 347 aaKnown RBP19.44■□□□□ 0.7
CLN3-241ENST00000635861 GTF2H1P32780 548 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 NDUFA8P51970 172 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 KDSRQ06136 332 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 SPOPLQ6IQ16 392 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 FAM186BQ8IYM0 893 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 C12orf29Q8N999 325 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 TERB1Q8NA31 727 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 CYFIP2Q96F07 1278 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 XPO6Q96QU8 1125 aaKnown RBP19.44■□□□□ 0.7
CLN3-241ENST00000635861 KLF16Q9BXK1 252 aaPredicted RBP19.44■□□□□ 0.7
CLN3-241ENST00000635861 NIF3L1Q9GZT8 377 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 SMOC1Q9H4F8 434 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.44■□□□□ 0.76e-9■■■■■ 134.6
CLN3-241ENST00000635861 FAM49BQ9NUQ9 324 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 MARK1Q9P0L2 795 aa19.44■□□□□ 0.7
CLN3-241ENST00000635861 KHNYNO15037 678 aaKnown RBP19.43■□□□□ 0.7
CLN3-241ENST00000635861 ADORA2BP29275 332 aa19.43■□□□□ 0.7
CLN3-241ENST00000635861 MESP2Q0VG99 397 aa19.43■□□□□ 0.7
CLN3-241ENST00000635861 ANO4Q32M45 955 aa19.43■□□□□ 0.7
CLN3-241ENST00000635861 DAB2IPQ5VWQ8 1189 aa19.43■□□□□ 0.7
CLN3-241ENST00000635861 LPCAT2Q7L5N7 544 aa19.43■□□□□ 0.7
CLN3-241ENST00000635861 ZNF513Q8N8E2 541 aaPredicted RBP19.43■□□□□ 0.7
CLN3-241ENST00000635861 SPRYD3Q8NCJ5 442 aa19.43■□□□□ 0.7
CLN3-241ENST00000635861 ELMO3Q96BJ8 720 aa19.43■□□□□ 0.7
CLN3-241ENST00000635861 CDK5RAP1Q96SZ6 601 aaKnown RBP19.43■□□□□ 0.7
CLN3-241ENST00000635861 TMEM8AQ9HCN3 771 aa19.43■□□□□ 0.7
CLN3-241ENST00000635861 WDR35Q9P2L0 1181 aa19.43■□□□□ 0.7
CLN3-241ENST00000635861 EVLQ9UI08 416 aaPredicted RBP19.43■□□□□ 0.7
CLN3-241ENST00000635861 ASCC3Q8N3C0 2202 aaKnown RBP19.43■□□□□ 0.7
CLN3-241ENST00000635861 LNP1A1A4G5 178 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 HHLA1C9JL84 531 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 CACNG3O60359 315 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 ADAM23O75077 832 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 CILPO75339 1184 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 HNRNPLP14866 589 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLN3-241ENST00000635861 ORC1Q13415 861 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 ADAM9Q13443 819 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 EDRF1Q3B7T1 1238 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 KRT39Q6A163 491 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 TCEAL6Q6IPX3 200 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 KRBA2Q6ZNG9 492 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 TMEM25Q86YD3 366 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 SFTPA1Q8IWL2 248 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 TAS1R2Q8TE23 839 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 TCEAL3Q969E4 200 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 BCCIPQ9P287 314 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLN3-241ENST00000635861 STX10O60499 249 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 GREM1O60565 184 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 IRF1P10914 325 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 ACO1P21399 889 aaKnown RBP19.42■□□□□ 0.7
CLN3-241ENST00000635861 BCKDHBP21953 392 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 PMLP29590 882 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 PLA2G4AP47712 749 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 GCLMP48507 274 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 KIF11P52732 1056 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 SHC2P98077 582 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 PPP3CAQ08209 521 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 ZCWPW2Q504Y3 356 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 EMC10Q5UCC4 262 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 GRAMD4Q6IC98 578 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 CCDC186Q7Z3E2 898 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 TTC30AQ86WT1 665 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 TWNKQ96RR1 684 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 APOBEC3GQ9HC16 384 aaKnown RBP19.42■□□□□ 0.7
CLN3-241ENST00000635861 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLN3-241ENST00000635861 DNMT3LQ9UJW3 386 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 ANGPTL2Q9UKU9 493 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 INVSQ9Y283 1065 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 ZNF510Q9Y2H8 683 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 ZDHHC9Q9Y397 364 aa19.42■□□□□ 0.7
CLN3-241ENST00000635861 USP24Q9UPU5 2620 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 TCRBV21S2A2A0A5A6 115 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 ANTXRLA6NF34 631 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 KCNK5O95279 499 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 PRR29P0C7W0 189 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 TRIM49P0CI25 452 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 TRIM49CP0CI26 452 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 NTSR1P30989 418 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 HOXD12P35452 270 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 DHPSP49366 369 aaPredicted RBP19.41■□□□□ 0.7
CLN3-241ENST00000635861 LMAN2Q12907 356 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 C10orf76Q5T2E6 689 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 N4BP2L1Q5TBK1 243 aaPredicted RBP19.41■□□□□ 0.7
CLN3-241ENST00000635861 GPRIN1Q7Z2K8 1008 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms