RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 SLC28A2O43868 658 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 HGFP14210 728 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 CD19P15391 556 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 NCLP19338 710 aaKnown RBP3.57□□□□□ -1.84
SCN1A-208ENST00000625916 MT3P25713 68 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 GATMP50440 423 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 PGDP52209 483 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 TIAL1Q01085 375 aaKnown RBP eCLIP3.57□□□□□ -1.84
SCN1A-208ENST00000625916 KRT81Q14533 505 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 ZNF628Q5EBL2 1059 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 TTBK1Q5TCY1 1321 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-208ENST00000625916 KCTD20Q7Z5Y7 419 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 DENND1CQ8IV53 801 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 B4GALNT2Q8NHY0 566 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 DIS3LQ8TF46 1054 aaKnown RBP3.57□□□□□ -1.84
SCN1A-208ENST00000625916 ASB5Q8WWX0 329 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 IGFBPL1Q8WX77 278 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 SPSB4Q96A44 273 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 TRMT61AQ96FX7 289 aaKnown RBP3.57□□□□□ -1.84
SCN1A-208ENST00000625916 DPH1Q9BZG8 443 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 ZNF518BQ9C0D4 1074 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 NUAK2Q9H093 628 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 A1CFQ9NQ94 594 aaKnown RBP3.57□□□□□ -1.84
SCN1A-208ENST00000625916 DECR2Q9NUI1 292 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 DNMT3BQ9UBC3 853 aaKnown RBP3.57□□□□□ -1.84
SCN1A-208ENST00000625916 NKX1-2Q9UD57 310 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-208ENST00000625916 ASAP1Q9ULH1 1129 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 ANKRD6Q9Y2G4 727 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 SBNO2Q9Y2G9 1366 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 LOC102723971A0A1B0GUV8 181 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 H7C4K7 107 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 FOXN3O00409 490 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-208ENST00000625916 MARCH6O60337 910 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 RASSF9O75901 435 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 PLAUP00749 431 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 NGFRP08138 427 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 MCM5P33992 734 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 ALDH7A1P49419 539 aaKnown RBP3.56□□□□□ -1.84
SCN1A-208ENST00000625916 TXNL4AP83876 142 aaKnown RBP3.56□□□□□ -1.84
SCN1A-208ENST00000625916 DEUP1Q05D60 604 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 ASIC2Q16515 512 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 EARS2Q5JPH6 523 aaKnown RBP3.56□□□□□ -1.84
SCN1A-208ENST00000625916 PNPLA1Q8N8W4 532 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 FAM71DQ8N9W8 422 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 ZNF479Q96JC4 524 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 VPS50Q96JG6 964 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 ZMAT3Q9HA38 289 aaKnown RBP3.56□□□□□ -1.84
SCN1A-208ENST00000625916 SMURF2Q9HAU4 748 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 TMEM8AQ9HCN3 771 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 AASDHPPTQ9NRN7 309 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 MDFICQ9P1T7 246 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 COG5Q9UP83 839 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 PAXBP1Q9Y5B6 917 aa3.56□□□□□ -1.84
SCN1A-208ENST00000625916 A8MVJ9 347 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 PHGDHO43175 533 aaKnown RBP3.55□□□□□ -1.84
SCN1A-208ENST00000625916 CCP110O43303 1012 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 CTIFO43310 598 aaKnown RBP3.55□□□□□ -1.84
SCN1A-208ENST00000625916 RRP9O43818 475 aaKnown RBP3.55□□□□□ -1.84
SCN1A-208ENST00000625916 ZC3H11AO75152 810 aaKnown RBP eCLIP3.55□□□□□ -1.84
SCN1A-208ENST00000625916 USP12O75317 370 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 PIAS2O75928 621 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 UBXN7O94888 489 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 NDUFB8O95169 186 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 ADRA1DP25100 572 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 PTDSS1P48651 473 aaKnown RBP3.55□□□□□ -1.84
SCN1A-208ENST00000625916 GPC5P78333 572 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 PPATQ06203 517 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 STK3Q13188 491 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 ST3GAL2Q16842 350 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 RFX8Q6ZV50 586 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 FAM57BQ71RH2 274 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 CHPFQ8IZ52 775 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 TMEM199Q8N511 208 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 C11orf44Q8N8P7 122 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 OR56A3Q8NH54 315 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 WIPF2Q8TF74 440 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-208ENST00000625916 KAZALD1Q96I82 304 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 PPP1R10Q96QC0 940 aaKnown RBP3.55□□□□□ -1.84
SCN1A-208ENST00000625916 TM2D2Q9BX73 214 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 SLC12A5Q9H2X9 1139 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 TCF7L1Q9HCS4 588 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 HOMER2Q9NSB8 354 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 GABBR1Q9UBS5 961 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 FZD4Q9ULV1 537 aa3.55□□□□□ -1.84
SCN1A-208ENST00000625916 SIRT4Q9Y6E7 314 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-208ENST00000625916 H3BML4 177 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 FGF2P09038 288 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 PARP1P09874 1014 aaKnown RBP3.54□□□□□ -1.84
SCN1A-208ENST00000625916 EN2P19622 333 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-208ENST00000625916 SLC7A1P30825 629 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 JAK3P52333 1124 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 PGGT1BP53609 377 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 SLC12A2P55011 1212 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 METTL25Q8N6Q8 603 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 PPP1R35Q8TAP8 253 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 SMCR8Q8TEV9 937 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-208ENST00000625916 PIGKQ92643 395 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 FCRL5Q96RD9 977 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 MEIS3Q99687 375 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 TUBB6Q9BUF5 446 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms