RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 MTMR3Q13615 1198 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 VEPH1Q14D04 833 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 TAF12Q16514 161 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 DUSP6Q16828 381 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 CCDC14Q49A88 953 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 TRNP1Q6NT89 227 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 C11orf63Q6NUN7 778 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 HFE2Q6ZVN8 426 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 ADGRD2Q7Z7M1 963 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 SCD5Q86SK9 330 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 DAAM2Q86T65 1068 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 RBM23Q86U06 439 aaKnown RBP8.4□□□□□ -1.06
CPNE3-209ENST00000620393 ITIH5Q86UX2 942 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 DEFB106AQ8N104 65 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 EMC1Q8N766 993 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 NIPA2Q8N8Q9 360 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 SLC7A14Q8TBB6 771 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 GDPD5Q8WTR4 605 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 GOLGA1Q92805 767 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 FBXO32Q969P5 355 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 NT5C3BQ969T7 300 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 FAM149B1Q96BN6 582 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 ZNF512Q96ME7 567 aaPredicted RBP8.4□□□□□ -1.06
CPNE3-209ENST00000620393 SLC2A13Q96QE2 648 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 CDCA3Q99618 268 aaPredicted RBP8.4□□□□□ -1.06
CPNE3-209ENST00000620393 CNPY3Q9BT09 278 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 TRIM62Q9BVG3 475 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 POPDC2Q9HBU9 364 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 ABCC13Q9NSE7 274 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 CLIC5Q9NZA1 410 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 LMCD1Q9NZU5 365 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 DPP7Q9UHL4 492 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 AMFRQ9UKV5 643 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 VPS9D1Q9Y2B5 631 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 JRKLQ9Y4A0 524 aa8.4□□□□□ -1.06
CPNE3-209ENST00000620393 TMEM265A0A087WTH1 108 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 A0A1W2PQH9 124 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 TMEM110-MUSTN1A8MSY1 372 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 CAPN9O14815 690 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 DAB1O75553 588 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 ENDOD1O94919 500 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 LRG1P02750 347 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 HNRNPA1P09651 372 aaKnown RBP eCLIP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 EPCAMP16422 314 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 COMTP21964 271 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 PSMA2P25787 234 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 HOXA9P31269 272 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 SDC4P31431 198 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 PTPN9P43378 593 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 PPP3CCP48454 512 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 PGFP49763 221 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 ZNF252P-AS1Q0IIN9 211 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 IFRD2Q12894 506 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 KCNC3Q14003 757 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 SLC25A52Q3SY17 297 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 DCAF6Q58WW2 860 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 PPM1LQ5SGD2 360 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 MEI1Q5TIA1 1274 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 SNX30Q5VWJ9 437 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 SYPL2Q5VXT5 272 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 BTBD8Q5XKL5 378 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 CC2D1AQ6P1N0 951 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 ELMSAN1Q6PJG2 1045 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 SYT10Q6XYQ8 523 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 PEX26Q7Z412 305 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 NT5DC3Q86UY8 548 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 ELMOD1Q8N336 334 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 ZNF276Q8N554 614 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 ARFGAP1Q8N6T3 406 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 STKLD1Q8NE28 680 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 OVCA2Q8WZ82 227 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 CENPIQ92674 756 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 PPP2R3CQ969Q6 453 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 PSMG2Q969U7 264 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 TRMT2BQ96GJ1 504 aaKnown RBP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 C16orf45Q96MC5 204 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 SLITRK1Q96PX8 696 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 WDR24Q96S15 920 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 NPY6RQ99463 290 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 NCAPGQ9BPX3 1015 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 NMUR1Q9HB89 426 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 TLR8Q9NR97 1041 aaKnown RBP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 WDR70Q9NW82 654 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 TMEM51Q9NW97 253 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 RRN3Q9NYV6 651 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 GMIPQ9P107 970 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 UXTQ9UBK9 157 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 DNAI1Q9UI46 699 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 MAGED2Q9UNF1 606 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-209ENST00000620393 NAALADL1Q9UQQ1 740 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 HCFC2Q9Y5Z7 792 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 VWA8A3KMH1 1905 aa8.39□□□□□ -1.07
CPNE3-209ENST00000620393 CTAGE9A4FU28 777 aa8.38□□□□□ -1.07
CPNE3-209ENST00000620393 ZNF840PA6NDX5 716 aa8.38□□□□□ -1.07
CPNE3-209ENST00000620393 RNF8O76064 485 aa8.38□□□□□ -1.07
CPNE3-209ENST00000620393 PAPLNO95428 1278 aa8.38□□□□□ -1.07
CPNE3-209ENST00000620393 FTCDO95954 541 aa8.38□□□□□ -1.07
CPNE3-209ENST00000620393 F11P03951 625 aa8.38□□□□□ -1.07
CPNE3-209ENST00000620393 POU2F2P09086 479 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms