RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SNX9Q9Y5X1 595 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 SNCAIPQ9Y6H5 919 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 TYROBPO43914 113 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 MSX2P35548 267 aaPredicted RBP13.05□□□□□ -0.32
LIG1-221ENST00000613670 PTPN11Q06124 597 aaPredicted RBP13.05□□□□□ -0.32
LIG1-221ENST00000613670 PEX6Q13608 980 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 VSIG10LQ86VR7 867 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 FLAD1Q8NFF5 587 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 ECSITQ9BQ95 431 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 DDX18Q9NVP1 670 aaKnown RBP13.05□□□□□ -0.32
LIG1-221ENST00000613670 MAFGO15525 162 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 UGT1A9O60656 530 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 RAG1P15918 1043 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 SERPINB9P50453 376 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 GRIK3Q13003 919 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 TMEM63BQ5T3F8 832 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 MCUQ8NE86 351 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 MMP19Q99542 508 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 NUF2Q9BZD4 464 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 UGT1A7Q9HAW7 530 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 UGT1A10Q9HAW8 530 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 UGT1A8Q9HAW9 530 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 DOT1LQ8TEK3 1739 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 PTPRJQ12913 1337 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 CCDC189A1A4V9 331 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 LYNP07948 512 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 PDGFRBP09619 1106 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 EIF4BP23588 611 aaKnown RBP13.04□□□□□ -0.32
LIG1-221ENST00000613670 SLC1A6P48664 564 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 TCEAL1Q15170 157 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 AMHR2Q16671 573 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 CWF19L1Q69YN2 538 aaKnown RBP13.04□□□□□ -0.32
LIG1-221ENST00000613670 WDR49Q8IV35 697 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 TRAPPC12Q8WVT3 735 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 SLC44A1Q8WWI5 657 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 KLHL4Q9C0H6 718 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 ZNRF3Q9ULT6 936 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 FKBP6O75344 327 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 APOEP02649 317 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 IL1R2P27930 398 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 TBL3Q12788 808 aaKnown RBP13.04□□□□□ -0.32
LIG1-221ENST00000613670 NME3Q13232 169 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 EML3Q32P44 896 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 ZC3H12AQ5D1E8 599 aaKnown RBP13.04□□□□□ -0.32
LIG1-221ENST00000613670 TNFAIP8L3Q5GJ75 292 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 RARS2Q5T160 578 aaKnown RBP13.04□□□□□ -0.32
LIG1-221ENST00000613670 ARMC3Q5W041 872 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 BRSK2Q8IWQ3 736 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 CLEC4DQ8WXI8 215 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 CPXM1Q96SM3 734 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 CNPY3Q9BT09 278 aa13.04□□□□□ -0.32
LIG1-221ENST00000613670 WDR27A2RRH5 827 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 SIGLEC16A6NMB1 481 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 CLCN3P51790 818 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 SH3BGRP55822 239 aaPredicted RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 PDE1CQ14123 709 aaPredicted RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 PDPK2PQ6A1A2 396 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 HACE1Q8IYU2 909 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 USP13Q92995 863 aaPredicted RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 KCNK16Q96T55 309 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 EBF4Q9BQW3 602 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 MED10Q9BTT4 135 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 UNKQ9C0B0 810 aaKnown RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 TRPV6Q9H1D0 765 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 ACSS2Q9NR19 701 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 THAP1Q9NVV9 213 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 EPS15L1Q9UBC2 864 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 RPS6KL1Q9Y6S9 549 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 MAGEB2O15479 319 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 ASS1P00966 412 aaKnown RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 WNT7BP56706 349 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 APLFQ8IW19 511 aaPredicted RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 ZNF669Q96BR6 464 aaPredicted RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 HPDLQ96IR7 371 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 APOL2Q9BQE5 337 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 GTSE1Q9NYZ3 720 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 ARHGAP26Q9UNA1 814 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 RPL26L1Q9UNX3 145 aaKnown RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 ZNF541Q9H0D2 1346 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 VWA5AO00534 786 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 CASQ2O14958 399 aaPredicted RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 NPTXRO95502 500 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 TOP3BO95985 862 aaKnown RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 FESP07332 822 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 RALBP11234 206 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 GNAZP19086 355 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 TCF7P36402 384 aaPredicted RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 CNTN2Q02246 1040 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 FLOT2Q14254 428 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 LBRQ14739 615 aaKnown RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 OASLQ15646 514 aaKnown RBP13.03□□□□□ -0.32
LIG1-221ENST00000613670 IGDCC3Q8IVU1 814 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 SCUBE3Q8IX30 993 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 AKT1S1Q96B36 256 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 KIF12Q96FN5 646 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 STRA6Q9BX79 667 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 RNF19AQ9NV58 838 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 IL1RAPL1Q9NZN1 696 aa13.03□□□□□ -0.32
LIG1-221ENST00000613670 NAV1Q8NEY1 1877 aa13.02□□□□□ -0.32
LIG1-221ENST00000613670 E5RJQ4 531 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms