RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 MAP3K7CLP57077 242 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 SLC7A9P82251 487 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 SATB1Q01826 763 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 CCINQ13939 588 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 GAB4Q2WGN9 574 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 EML3Q32P44 896 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 KLHDC7AQ5VTJ3 777 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 FSTL4Q6MZW2 842 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 DPY19L2P1Q6NXN4 242 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 PKN3Q6P5Z2 889 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 TRIM65Q6PJ69 517 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 CACNA2D4Q7Z3S7 1137 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 TMEM139Q8IV31 216 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 FBXL13Q8NEE6 735 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 TTC16Q8NEE8 873 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 OR8K1Q8NGG5 319 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 OSCP1Q8WVF1 389 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 FBXO32Q969P5 355 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 WBP2Q969T9 261 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 ZFRQ96KR1 1074 aaKnown RBP12.18□□□□□ -0.46
LINC00539-204ENST00000608957 DNAJC7Q99615 494 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 BAG1Q99933 345 aaPredicted RBP12.18□□□□□ -0.46
LINC00539-204ENST00000608957 NAA15Q9BXJ9 866 aaKnown RBP12.18□□□□□ -0.46
LINC00539-204ENST00000608957 CYP3A43Q9HB55 503 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 FBRSL1Q9HCM7 1045 aaKnown RBP12.18□□□□□ -0.46
LINC00539-204ENST00000608957 SIX2Q9NPC8 291 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 THG1LQ9NWX6 298 aaKnown RBP12.18□□□□□ -0.46
LINC00539-204ENST00000608957 RAB20Q9NX57 234 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.18□□□□□ -0.46
LINC00539-204ENST00000608957 GMIPQ9P107 970 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 CHORDC1Q9UHD1 332 aaPredicted RBP12.18□□□□□ -0.46
LINC00539-204ENST00000608957 FBXO4Q9UKT5 387 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 PYCARDQ9ULZ3 195 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 COQ4Q9Y3A0 265 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 DAAM1Q9Y4D1 1078 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 CPQQ9Y646 472 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 GPR179Q6PRD1 2367 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 SCAMP3O14828 347 aaKnown RBP12.17□□□□□ -0.46
LINC00539-204ENST00000608957 RTN3O95197 1032 aaPredicted RBP12.17□□□□□ -0.46
LINC00539-204ENST00000608957 ABL1P00519 1130 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 ZDHHC11BP0C7U3 371 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 PFKLP17858 780 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 POLR2FP61218 127 aaKnown RBP12.17□□□□□ -0.46
LINC00539-204ENST00000608957 APBA1Q02410 837 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 DMWDQ09019 674 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 TSR1Q2NL82 804 aaKnown RBP12.17□□□□□ -0.46
LINC00539-204ENST00000608957 ZNF528Q3MIS6 628 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 ZNF394Q53GI3 561 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 TMEM196Q5HYL7 178 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 PPP1R26Q5T8A7 1209 aaPredicted RBP12.17□□□□□ -0.46
LINC00539-204ENST00000608957 SNX30Q5VWJ9 437 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 MAMSTRQ6ZN01 415 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 CLEC20AQ6ZU45 233 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 SLC4A11Q8NBS3 891 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 BAP1Q92560 729 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 EZH1Q92800 747 aaPredicted RBP12.17□□□□□ -0.46
LINC00539-204ENST00000608957 NKD2Q969F2 451 aaPredicted RBP12.17□□□□□ -0.46
LINC00539-204ENST00000608957 CYFIP2Q96F07 1278 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 HNRNPABQ99729 332 aaKnown RBP12.17□□□□□ -0.46
LINC00539-204ENST00000608957 NT5C1AQ9BXI3 368 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 IMPG2Q9BZV3 1241 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 CCSER2Q9H7U1 834 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 ECT2Q9H8V3 914 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 DUS2Q9NX74 493 aaKnown RBP12.17□□□□□ -0.46
LINC00539-204ENST00000608957 SMPD4Q9NXE4 827 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 FHOD1Q9Y613 1164 aa12.17□□□□□ -0.46
LINC00539-204ENST00000608957 ANTXRLA6NF34 631 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 LRRC53A6NM62 1247 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 ESPNB1AK53 854 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 TRDMT1O14717 391 aaKnown RBP12.16□□□□□ -0.46
LINC00539-204ENST00000608957 ARHGAP6O43182 974 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 COCHO43405 550 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 EGFP01133 1207 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 FAM200BP0CF97 657 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 UCHL3P15374 230 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 GJA4P35212 333 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 PPP3CCP48454 512 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 RAD23BP54727 409 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 PDGFRLQ15198 375 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 MEA1Q16626 185 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 RRAGAQ7L523 313 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 UBR7Q8N806 425 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 ZBTB44Q8NCP5 570 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 EHBP1Q8NDI1 1231 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 LMO3Q8TAP4 145 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 OVCA2Q8WZ82 227 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 JAKMIP2Q96AA8 810 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 SLITRK1Q96PX8 696 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 NUCKS1Q9H1E3 243 aaKnown RBP12.16□□□□□ -0.46
LINC00539-204ENST00000608957 NLRC4Q9NPP4 1024 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 CISHQ9NSE2 258 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 ZNHIT6Q9NWK9 470 aaKnown RBP12.16□□□□□ -0.46
LINC00539-204ENST00000608957 OSER1Q9NX31 292 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 EHD2Q9NZN4 543 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 APEX2Q9UBZ4 518 aa12.16□□□□□ -0.46
LINC00539-204ENST00000608957 EP300Q09472 2414 aaPredicted RBP12.16□□□□□ -0.46
LINC00539-204ENST00000608957 K7ESF4 209 aa12.15□□□□□ -0.46
LINC00539-204ENST00000608957 LILRB5O75023 590 aa12.15□□□□□ -0.46
LINC00539-204ENST00000608957 MBL2P11226 248 aaPredicted RBP12.15□□□□□ -0.46
LINC00539-204ENST00000608957 HNRNPH3P31942 346 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms