RNA–Protein interactions for RNA: ENST00000600523.5

SRRM1-223, Transcript of serine and arginine repetitive matrix 1, human

TSL 5

Gene SRRM1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-223	ENST00000600523	ZDHHC17	Q8IUH5	632 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	SIX5	Q8N196	739 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	CPA6	Q8N4T0	437 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	EPS8L1	Q8TE68	723 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	ATP2A3	Q93084	1043 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	PBXIP1	Q96AQ6	731 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	SLC4A5	Q9BY07	1137 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	RNF38	Q9H0F5	515 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	GKN1	Q9NS71	199 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	SEPT11	Q9NVA2	429 aa	Known RBP	13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	DUS2	Q9NX74	493 aa	Known RBP	13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	CFAP97	Q9P2B7	532 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	CA14	Q9ULX7	337 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	CCL26	Q9Y258	94 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	GREB1	Q4ZG55	1949 aa		13.64	□□□□□ -0.23
SRRM1-223	ENST00000600523	NUP210	Q8TEM1	1887 aa	Predicted RBP	13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	PATJ	Q8NI35	1801 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	E2F8	A0AVK6	867 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	MAN2B1	O00754	1011 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	NFATC1	O95644	943 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	LTF	P02788	710 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	EFEMP1	Q12805	493 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	MLF2	Q15773	248 aa	Predicted RBP	13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	ZNF77	Q15935	545 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	ASIC2	Q16515	512 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	ITPRIPL2	Q3MIP1	535 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	SLC44A4	Q53GD3	710 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	POTEH	Q6S545	545 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	TMEM110	Q86TL2	294 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	NOP9	Q86U38	636 aa	Known RBP	13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	MIB1	Q86YT6	1006 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	SCUBE3	Q8IX30	993 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	C1orf131	Q8NDD1	294 aa	Known RBP	13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	OSCP1	Q8WVF1	389 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.63	□□□□□ -0.23	2e-12	■■□□□ 13.6
SRRM1-223	ENST00000600523	OTUB2	Q96DC9	234 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	NELL2	Q99435	816 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	XPO4	Q9C0E2	1151 aa	Known RBP	13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	C8orf33	Q9H7E9	229 aa	Predicted RBP	13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	NMUR1	Q9HB89	426 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	MARCH2	Q9P0N8	246 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	RASAL2	Q9UJF2	1139 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	ZNF510	Q9Y2H8	683 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	LUC7L2	Q9Y383	392 aa	Known RBP	13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523	C5orf42	Q9H799	3197 aa		13.63	□□□□□ -0.23
SRRM1-223	ENST00000600523		A0A1W2PQJ5	194 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	YJEFN3	A6XGL0	299 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	PRR33	A8MZF0	331 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523		E5RJQ4	531 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523		E7ENQ6	273 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	NCAM2	O15394	837 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	GPR37L1	O60883	481 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	GLI1	P08151	1106 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	NCAM1	P13591	858 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	NSF	P46459	744 aa	Known RBP	13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	RPL34	P49207	117 aa	Known RBP	13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	MLLT6	P55198	1093 aa	Predicted RBP	13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	YWHAZ	P63104	245 aa	Known RBP	13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	USP4	Q13107	963 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	TRIM14	Q14142	442 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	OR6B2	Q6IFH4	312 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	ZNF852	Q6ZMS4	543 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	SCD5	Q86SK9	330 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	VPS36	Q86VN1	386 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	C18orf8	Q96DM3	657 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	RSPRY1	Q96DX4	576 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	TRIM5	Q9C035	493 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	DCLK3	Q9C098	648 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	SMOC2	Q9H3U7	446 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	BZW2	Q9Y6E2	419 aa	Known RBP	13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	PIAS3	Q9Y6X2	628 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	ITIH6	Q6UXX5	1313 aa		13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	ZNF638	Q14966	1978 aa	Known RBP	13.62	□□□□□ -0.23
SRRM1-223	ENST00000600523	MYO10	Q9HD67	2058 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	LRRC53	A6NM62	1247 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	HSF2BP	O75031	334 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	TBX18	O95935	607 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	ADH1C	P00326	375 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	MME	P08473	750 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	IRF1	P10914	325 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	TNFAIP3	P21580	790 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	CDH5	P33151	784 aa	Predicted RBP	13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	HARS2	P49590	506 aa	Known RBP	13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	RUNX3	Q13761	415 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	NAA35	Q5VZE5	725 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	SPECC1L	Q69YQ0	1117 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	TPRG1	Q6ZUI0	275 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	BEND5	Q7L4P6	421 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	BMP8A	Q7Z5Y6	402 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	RALGPS2	Q86X27	583 aa	Predicted RBP	13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	FLCN	Q8NFG4	579 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	DDX1	Q92499	740 aa	Known RBP	13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	EDEM1	Q92611	657 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	PLD4	Q96BZ4	506 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	ZFYVE19	Q96K21	471 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	FAM83C	Q9BQN1	747 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	EBF3	Q9H4W6	596 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	POPDC2	Q9HBU9	364 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	HEBP1	Q9NRV9	189 aa		13.61	□□□□□ -0.23
SRRM1-223	ENST00000600523	TMEM51	Q9NW97	253 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms