RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 GAP43P17677 238 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 GNL1P36915 607 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-210ENST00000597618 CACNA2D1P54289 1103 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 CAMK2BQ13554 666 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 STARD3Q14849 445 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 HLA-BQ31612 363 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 SNX30Q5VWJ9 437 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 DYMQ7RTS9 669 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 SYCP3Q8IZU3 236 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 NUP93Q8N1F7 819 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 PDCD7Q8N8D1 485 aaKnown RBP10.75□□□□□ -0.69
TRIM28-210ENST00000597618 RHBDD1Q8TEB9 315 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 ERLEC1Q96DZ1 483 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 TOE1Q96GM8 510 aaKnown RBP10.75□□□□□ -0.69
TRIM28-210ENST00000597618 CRELD1Q96HD1 420 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 CBWD1Q9BRT8 395 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 ZNF518BQ9C0D4 1074 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 PRDM16Q9HAZ2 1276 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 TMEM30AQ9NV96 361 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 INTS13Q9NVM9 706 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 USP36Q9P275 1121 aaKnown RBP10.75□□□□□ -0.69
TRIM28-210ENST00000597618 WDR35Q9P2L0 1181 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 PCDHB13Q9Y5F0 798 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 CEP192Q8TEP8 1941 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 MYOFQ9NZM1 2061 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 GOLGA8CPA6NN73 597 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 PRRT4C9JH25 899 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 KIAA0391O15091 583 aaKnown RBP10.74□□□□□ -0.69
TRIM28-210ENST00000597618 ATXN7O15265 892 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-210ENST00000597618 TACC1O75410 805 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 GCNT3O95395 438 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 BMP15O95972 392 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 PRB1P04280 392 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 FAM163BP0C2L3 166 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 IRF1P10914 325 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 TYRP14679 529 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 PTPN1P18031 435 aaKnown RBP10.74□□□□□ -0.69
TRIM28-210ENST00000597618 OXTRP30559 389 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 ZNF132P52740 706 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 ALCAMQ13740 583 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 SUZ12Q15022 739 aaKnown RBP10.74□□□□□ -0.69
TRIM28-210ENST00000597618 SURF1Q15526 300 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 SMAD1Q15797 465 aaKnown RBP10.74□□□□□ -0.69
TRIM28-210ENST00000597618 DUOXA2Q1HG44 320 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 DCAF12L1Q5VU92 463 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 DBX2Q6ZNG2 339 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 GPD1LQ8N335 351 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 ENGASEQ8NFI3 743 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 OR5B17Q8NGF7 314 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 OR6B3Q8NGW1 331 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 SLC39A7Q92504 469 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 DCBLD2Q96PD2 775 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 MRPL45Q9BRJ2 306 aaKnown RBP10.74□□□□□ -0.69
TRIM28-210ENST00000597618 GPR174Q9BXC1 333 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 BBS2Q9BXC9 721 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 CCSER2Q9H7U1 834 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 OLFML3Q9NRN5 406 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 WSB2Q9NYS7 404 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-210ENST00000597618 MARK1Q9P0L2 795 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 ATP8B3O60423 1300 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 PTPRJQ12913 1337 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 GOLGA4Q13439 2230 aaKnown RBP10.74□□□□□ -0.69
TRIM28-210ENST00000597618 PTPRBP23467 1997 aa10.74□□□□□ -0.69
TRIM28-210ENST00000597618 NPC1O15118 1278 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 TNFSF14O43557 240 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 C1QL1O75973 258 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 PRPF6O94906 941 aaKnown RBP10.73□□□□□ -0.69
TRIM28-210ENST00000597618 ZDHHC11BP0C7U3 371 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 HLA-EP13747 358 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 DGKGP49619 791 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 SLC5A3P53794 718 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 TNNC1P63316 161 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 GOLGA8FQ08AF8 430 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 GOLGA8DPQ0D2H9 430 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 FUT11Q495W5 492 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 HTR3DQ70Z44 454 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 MARCH9Q86YJ5 346 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 WDR49Q8IV35 697 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 B3GALNT2Q8NCR0 500 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 LSM14AQ8ND56 463 aaKnown RBP10.73□□□□□ -0.69
TRIM28-210ENST00000597618 PIP4K2CQ8TBX8 421 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 B3GNT5Q9BYG0 378 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 DPEP3Q9H4B8 488 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 PCIF1Q9H4Z3 704 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 ITM2CQ9NQX7 267 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.73□□□□□ -0.692e-9■■■■■ 29.5
TRIM28-210ENST00000597618 COMMD8Q9NX08 183 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 TBC1D7Q9P0N9 293 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 STK17AQ9UEE5 414 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 CHORDC1Q9UHD1 332 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-210ENST00000597618 LSM7Q9UK45 103 aaKnown RBP10.73□□□□□ -0.69
TRIM28-210ENST00000597618 STON1Q9Y6Q2 735 aa10.73□□□□□ -0.69
TRIM28-210ENST00000597618 FAM149AA5PLN7 773 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 ZNF233A6NK53 670 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 METTL12A8MUP2 240 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 A8MXQ7 604 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 H3BQV1 296 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 CLDN5O00501 218 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 TLR5O60602 858 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 PLA2G2AP14555 144 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms