RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 CLSTN2Q9H4D0 955 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 NCDNQ9UBB6 729 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 LSM7Q9UK45 103 aaKnown RBP16.06■□□□□ 0.16
TRIM28-203ENST00000593582 FAM186AA6NE01 2351 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-203ENST00000593582 O00370 1275 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 XPO1O14980 1071 aaKnown RBP16.05■□□□□ 0.16
TRIM28-203ENST00000593582 ZBED1O96006 694 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 SETSIPP0DME0 302 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 TKTL1P51854 596 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 GAD2Q05329 585 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 PDE4CQ08493 712 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 ANO4Q32M45 955 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 RAB41Q5JT25 222 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 RRAGAQ7L523 313 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 SYT13Q7L8C5 426 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 SCD5Q86SK9 330 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 CREBRFQ8IUR6 639 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 CAMKK1Q8N5S9 505 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 EZH1Q92800 747 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-203ENST00000593582 WBP2Q969T9 261 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 LRRC4Q9HBW1 653 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 SPHK2Q9NRA0 654 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 NUDT5Q9UKK9 219 aa16.05■□□□□ 0.16
TRIM28-203ENST00000593582 ZNF292O60281 2723 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 K7EQS6 105 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 MDM4O15151 490 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 GREM1O60565 184 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 SLC6A11P48066 632 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 SIM2Q14190 667 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-203ENST00000593582 STILQ15468 1287 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 TPD52L1Q16890 204 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-203ENST00000593582 PREPLQ4J6C6 727 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-203ENST00000593582 LCLAT1Q6UWP7 414 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 PRR23BQ6ZRT6 265 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 RSRC2Q7L4I2 434 aaKnown RBP16.04■□□□□ 0.16
TRIM28-203ENST00000593582 WDR5BQ86VZ2 330 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 MIB1Q86YT6 1006 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 UBA3Q8TBC4 463 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 KAT5Q92993 513 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 CNOT6LQ96LI5 555 aaKnown RBP16.04■□□□□ 0.16
TRIM28-203ENST00000593582 IPO9Q96P70 1041 aaKnown RBP16.04■□□□□ 0.16
TRIM28-203ENST00000593582 INTS2Q9H0H0 1204 aaKnown RBP16.04■□□□□ 0.16
TRIM28-203ENST00000593582 ARHGEF4Q9NR80 690 aa16.04■□□□□ 0.16
TRIM28-203ENST00000593582 EP300Q09472 2414 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-203ENST00000593582 GVINP1Q7Z2Y8 2422 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 CCDC163A0A0D9SF12 145 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 TULP2O00295 520 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 HOXC11O43248 304 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-203ENST00000593582 HRO43593 1189 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 KAT7O95251 611 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 APODP05090 189 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 GRIA2P42262 883 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 SEC13P55735 322 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 YWHAGP61981 247 aaKnown RBP eCLIP16.03■□□□□ 0.16
TRIM28-203ENST00000593582 COG7P83436 770 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 EFEMP1Q12805 493 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 C2orf27AQ580R0 203 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 PM20D1Q6GTS8 502 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 CLEC17AQ6ZS10 378 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 NUDT18Q6ZVK8 323 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 C12orf40Q86WS4 652 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 TMEM25Q86YD3 366 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 ARHGEF19Q8IW93 802 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 SIX6OS1Q8N1H7 587 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 NAT16Q8N8M0 369 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 RBBP8NLQ8NC74 664 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-203ENST00000593582 USP33Q8TEY7 942 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 ULBP1Q9BZM6 244 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 NUP62CLQ9H1M0 184 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 DEC1Q9P2X7 70 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 GMEB2Q9UKD1 530 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 STRIP2Q9ULQ0 834 aa16.03■□□□□ 0.16
TRIM28-203ENST00000593582 MYO16Q9Y6X6 1858 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 RNF225M0QZC1 329 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-203ENST00000593582 HOXC13P31276 330 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 PXNP49023 591 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-203ENST00000593582 MRPS21P82921 87 aaKnown RBP16.02■□□□□ 0.16
TRIM28-203ENST00000593582 KDSRQ06136 332 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 ADIGQ0VDE8 80 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 DMC1Q14565 340 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 CNGA2Q16280 664 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 LPAL2Q16609 132 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 LAIR1Q6GTX8 287 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 CEP68Q76N32 757 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 KIAA2013Q8IYS2 634 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 DCLK2Q8N568 766 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 KCTD13Q8WZ19 329 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 TFAP2BQ92481 460 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 HHIPQ96QV1 700 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 MED15Q96RN5 788 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 POLR3BQ9NW08 1133 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-203ENST00000593582 MARCH2Q9P0N8 246 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 WDR35Q9P2L0 1181 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 DACH1Q9UI36 760 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 RASAL2Q9UJF2 1139 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.02■□□□□ 0.165e-7■■□□□ 12.4
TRIM28-203ENST00000593582 ZNF510Q9Y2H8 683 aa16.02■□□□□ 0.16
TRIM28-203ENST00000593582 DMXL1Q9Y485 3027 aa16.01■□□□□ 0.15
TRIM28-203ENST00000593582 A0A0A0MRY4 1105 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms