RNA–Protein interactions for RNA: ENST00000583732.1

SREBF1-222, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 4

Gene SREBF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-222	ENST00000583732	CDX4	O14627	284 aa	Predicted RBP	16	■□□□□ 0.15
SREBF1-222	ENST00000583732	MDM4	O15151	490 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	CYP26A1	O43174	497 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	HLA-DRA	P01903	254 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	FAM200B	P0CF97	657 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	HOXB2	P14652	356 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	ASPA	P45381	313 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	SHC2	P98077	582 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	MAP7D1	Q3KQU3	841 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	EGFLAM	Q63HQ2	1017 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	GRAMD4	Q6IC98	578 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	TPGS1	Q6ZTW0	290 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	SV2A	Q7L0J3	742 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	SLC9A9	Q8IVB4	645 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	TWNK	Q96RR1	684 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	FBXO44	Q9H4M3	255 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	MMRN2	Q9H8L6	949 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	FSCN3	Q9NQT6	498 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	TLR8	Q9NR97	1041 aa	Known RBP	16	■□□□□ 0.15
SREBF1-222	ENST00000583732	TMEM74B	Q9NUR3	256 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	NUDT5	Q9UKK9	219 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732	CFAP45	Q9UL16	551 aa		16	■□□□□ 0.15
SREBF1-222	ENST00000583732		A0A0A0MRY4	1105 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	PDXK	O00764	312 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	ASS1	P00966	412 aa	Known RBP	15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	TRIM49	P0CI25	452 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	TRIM49C	P0CI26	452 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	PFKFB1	P16118	471 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	GABRG2	P18507	467 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	SPINK2	P20155	84 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	LYSMD4	Q5XG99	296 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	TRMT11	Q7Z4G4	463 aa	Known RBP	15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	MIB1	Q86YT6	1006 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	DEFB124	Q8NES8	71 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	BHMT	Q93088	406 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	BBS2	Q9BXC9	721 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	KLF16	Q9BXK1	252 aa	Predicted RBP	15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	NUSAP1	Q9BXS6	441 aa	Known RBP	15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	CSNK1G1	Q9HCP0	422 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	OSER1	Q9NX31	292 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	CALCOCO1	Q9P1Z2	691 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	LSM7	Q9UK45	103 aa	Known RBP	15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	HCN2	Q9UL51	889 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	FRMD4B	Q9Y2L6	1034 aa		15.99	■□□□□ 0.15
SREBF1-222	ENST00000583732	CALU	O43852	315 aa	Predicted RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	KIF20A	O95235	890 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	TOP3B	O95985	862 aa	Known RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	RPN1	P04843	607 aa	Known RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	CFI	P05156	583 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	PRR29	P0C7W0	189 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	PDIA4	P13667	645 aa	Known RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	TYR	P14679	529 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	CD58	P19256	250 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	ACO1	P21399	889 aa	Known RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	ITPKA	P23677	461 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	NTSR1	P30989	418 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	RPL6	Q02878	288 aa	Known RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	BYSL	Q13895	437 aa	Known RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	PREPL	Q4J6C6	727 aa	Predicted RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	C1orf220	Q5T0J3	134 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	CLEC20A	Q6ZU45	233 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	TOGARAM2	Q6ZUX3	1019 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	NUDT18	Q6ZVK8	323 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	UNC93A	Q86WB7	457 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	CRYBG2	Q8N1P7	616 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	TMC2	Q8TDI7	906 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	TAF4B	Q92750	862 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	ACOX2	Q99424	681 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	NMUR1	Q9HB89	426 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	APOBEC3G	Q9HC16	384 aa	Known RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	EVL	Q9UI08	416 aa	Predicted RBP	15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	RCOR1	Q9UKL0	485 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	MAPK8IP1	Q9UQF2	711 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	RAD54B	Q9Y620	910 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	CHD8	Q9HCK8	2581 aa		15.98	■□□□□ 0.15
SREBF1-222	ENST00000583732	ZFHX4	Q86UP3	3567 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732		A0A1W2PQH9	124 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	GREM1	O60565	184 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	RARG	P13631	454 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	ENG	P17813	658 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	TRIM21	P19474	475 aa	Known RBP	15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	ATP5C1	P36542	298 aa	Known RBP	15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	GCLM	P48507	274 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	VAMP7	P51809	220 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	GOLGA8F	Q08AF8	430 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	GOLGA8DP	Q0D2H9	430 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	LMAN2	Q12907	356 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	ATL3	Q6DD88	541 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	KIAA1211L	Q6NV74	962 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	HTR3D	Q70Z44	454 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	SYT12	Q8IV01	421 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	CHPF	Q8IZ52	775 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	TAS1R2	Q8TE23	839 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	CYFIP2	Q96F07	1278 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	XPO6	Q96QU8	1125 aa	Known RBP	15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	GTPBP2	Q9BX10	602 aa	Known RBP	15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	IMPG2	Q9BZV3	1241 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	SLC6A17	Q9H1V8	727 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	PLK2	Q9NYY3	685 aa		15.97	■□□□□ 0.15
SREBF1-222	ENST00000583732	CYP8B1	Q9UNU6	501 aa		15.97	■□□□□ 0.15

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms