RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 CCDC65Q8IXS2 484 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 MDM1Q8TC05 714 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 CCDC127Q96BQ5 260 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 MRGPRX1Q96LB2 322 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 CLIC6Q96NY7 704 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 BBS2Q9BXC9 721 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 SLC6A17Q9H1V8 727 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 COMMD8Q9NX08 183 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 KIAA1522Q9P206 1035 aaPredicted RBP10.52□□□□□ -0.73
RFFL-208ENST00000581039 NXF1Q9UBU9 619 aaKnown RBP10.52□□□□□ -0.73
RFFL-208ENST00000581039 FBXO2Q9UK22 296 aaPredicted RBP10.52□□□□□ -0.73
RFFL-208ENST00000581039 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.52□□□□□ -0.73
RFFL-208ENST00000581039 SRPRBQ9Y5M8 271 aaKnown RBP10.52□□□□□ -0.73
RFFL-208ENST00000581039 RAD54BQ9Y620 910 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 CLIC4Q9Y696 253 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 NBEAQ8NFP9 2946 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 ADAMTS9Q9P2N4 1935 aa10.52□□□□□ -0.73
RFFL-208ENST00000581039 ITPR1Q14643 2758 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 ADAMTS20P59510 1910 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 A0A1B0GTW7 788 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 MEI4A8MW99 385 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 PRRT4C9JH25 899 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 GFRA2O00451 464 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 CACNG3O60359 315 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 CLSTN1O94985 981 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 ZDHHC11BP0C7U3 371 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 TYRP14679 529 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 DGKGP49619 791 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 SLC5A3P53794 718 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 GOLGA8FQ08AF8 430 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 GOLGA8DPQ0D2H9 430 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 STARD3Q14849 445 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 SNRNP35Q16560 246 aaKnown RBP10.51□□□□□ -0.73
RFFL-208ENST00000581039 GLRX5Q86SX6 157 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 SLCO6A1Q86UG4 719 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 WBP2Q969T9 261 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 TOE1Q96GM8 510 aaKnown RBP10.51□□□□□ -0.73
RFFL-208ENST00000581039 TNIP3Q96KP6 325 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 MIR1-1HGQ9H1L0 117 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 CD248Q9HCU0 757 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 DMAP1Q9NPF5 467 aaPredicted RBP10.51□□□□□ -0.73
RFFL-208ENST00000581039 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.51□□□□□ -0.73
RFFL-208ENST00000581039 CACNA2D2Q9NY47 1150 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 IL37Q9NZH6 218 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 GMIPQ9P107 970 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 LSM7Q9UK45 103 aaKnown RBP10.51□□□□□ -0.73
RFFL-208ENST00000581039 PCOLCE2Q9UKZ9 415 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 RAXQ9Y2V3 346 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 FREM2Q5SZK8 3169 aa10.51□□□□□ -0.73
RFFL-208ENST00000581039 PLXND1Q9Y4D7 1925 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 PCDH15Q96QU1 1955 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 WASH3PC4AMC7 463 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 TLR5O60602 858 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 CBFA2T3O75081 653 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 PHACTR2O75167 634 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 STAU1O95793 577 aaKnown RBP10.5□□□□□ -0.73
RFFL-208ENST00000581039 NCAM1P13591 858 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 ATICP31939 592 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 ATP5C1P36542 298 aaKnown RBP10.5□□□□□ -0.73
RFFL-208ENST00000581039 MYL6P60660 151 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 PSMD6Q15008 389 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 IL27RAQ6UWB1 636 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 METTL3Q86U44 580 aaKnown RBP10.5□□□□□ -0.73
RFFL-208ENST00000581039 FAM35AQ86V20 835 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 CADM4Q8NFZ8 388 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 RHBDD1Q8TEB9 315 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 DNASE2BQ8WZ79 361 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 SYAP1Q96A49 352 aaPredicted RBP10.5□□□□□ -0.73
RFFL-208ENST00000581039 SMARCD1Q96GM5 515 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 LRIG1Q96JA1 1093 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 CGRRF1Q99675 332 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 GPR174Q9BXC1 333 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 KLF16Q9BXK1 252 aaPredicted RBP10.5□□□□□ -0.73
RFFL-208ENST00000581039 LRRC27Q9C0I9 530 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 FBXO44Q9H4M3 255 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 GAREM1Q9H706 876 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 PRDM16Q9HAZ2 1276 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 CD93Q9NPY3 652 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 SCUBE2Q9NQ36 999 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 ITM2CQ9NQX7 267 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 TLR8Q9NR97 1041 aaKnown RBP10.5□□□□□ -0.73
RFFL-208ENST00000581039 MARK1Q9P0L2 795 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 NFE2L3Q9Y4A8 694 aa10.5□□□□□ -0.73
RFFL-208ENST00000581039 LAMA5O15230 3695 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 ACACAQ13085 2346 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 FAM92AA1XBS5 289 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 VPS37CA5D8V6 355 aaPredicted RBP10.49□□□□□ -0.73
RFFL-208ENST00000581039 BCAT2O15382 392 aaPredicted RBP10.49□□□□□ -0.73
RFFL-208ENST00000581039 GREM1O60565 184 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 AP1G2O75843 785 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 CER1O95813 267 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 TBX18O95935 607 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 CISD3P0C7P0 127 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 ZNF883P0CG24 379 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 OXTRP30559 389 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 HOXD13P35453 343 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 MATKP42679 507 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 CYP2J2P51589 502 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 ZNF132P52740 706 aa10.49□□□□□ -0.73
RFFL-208ENST00000581039 CDH8P55286 799 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms