RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 RALAP11233 206 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 PABPC1LQ4VXU2 614 aaKnown RBP11.23□□□□□ -0.61
SS18-213ENST00000579640 SNX30Q5VWJ9 437 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 HFE2Q6ZVN8 426 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 SCD5Q86SK9 330 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 SLC35F6Q8N357 371 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 ZNF276Q8N554 614 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 BTBD6Q96KE9 485 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 C16orf45Q96MC5 204 aaPredicted RBP11.23□□□□□ -0.61
SS18-213ENST00000579640 CDK5RAP1Q96SZ6 601 aaKnown RBP11.23□□□□□ -0.61
SS18-213ENST00000579640 TRIM7Q9C029 511 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 TRPM5Q9NZQ8 1165 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 GMIPQ9P107 970 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 AMFRQ9UKV5 643 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 ALG6Q9Y672 507 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 TRIOBPQ9H2D6 2365 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 A0A1W2PQH9 124 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 TMEM110-MUSTN1A8MSY1 372 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 RNF8O76064 485 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 PAPLNO95428 1278 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 FGF19O95750 216 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 FYNP06241 537 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 NCAM1P13591 858 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 POU3F3P20264 500 aaPredicted RBP11.23□□□□□ -0.61
SS18-213ENST00000579640 OGDHQ02218 1023 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 ZNF252P-AS1Q0IIN9 211 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 KCNC3Q14003 757 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 SLC25A52Q3SY17 297 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 CCDC14Q49A88 953 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 DCAF6Q58WW2 860 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 ZNF697Q5TEC3 545 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 STRADAQ7RTN6 431 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 PEX26Q7Z412 305 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 TADA2BQ86TJ2 420 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 LEMD2Q8NC56 503 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 STKLD1Q8NE28 680 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 RNF139Q8WU17 664 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 NT5C3BQ969T7 300 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 TTYH1Q9H313 450 aaPredicted RBP11.23□□□□□ -0.61
SS18-213ENST00000579640 NMUR1Q9HB89 426 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 OLA1Q9NTK5 396 aaKnown RBP11.23□□□□□ -0.61
SS18-213ENST00000579640 JRKLQ9Y4A0 524 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 SPDYE4A6NLX3 237 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 SPOPO43791 374 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 COMTP21964 271 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 CDC25CP30307 473 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 PCK1P35558 622 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 TUBP50607 506 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 TRNP1Q6NT89 227 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 MSANTD2Q6P1R3 559 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 TMEM184AQ6ZMB5 413 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 NT5DC3Q86UY8 548 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 EFHBQ8N7U6 833 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 CMASQ8NFW8 434 aaPredicted RBP11.22□□□□□ -0.61
SS18-213ENST00000579640 CENPIQ92674 756 aaPredicted RBP11.22□□□□□ -0.61
SS18-213ENST00000579640 PGAP3Q96FM1 320 aaPredicted RBP11.22□□□□□ -0.61
SS18-213ENST00000579640 CFAP57Q96MR6 1250 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 NPY6RQ99463 290 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 PRKD2Q9BZL6 878 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 PRDM12Q9H4Q4 367 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 SFXN1Q9H9B4 322 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 ASAH2Q9NR71 780 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.22□□□□□ -0.61
SS18-213ENST00000579640 NAALADL1Q9UQQ1 740 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 MYO7AQ13402 2215 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 CHD9Q3L8U1 2897 aa11.22□□□□□ -0.61
SS18-213ENST00000579640 ZNF840PA6NDX5 716 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 MIF4GDA9UHW6 222 aaKnown RBP11.21□□□□□ -0.61
SS18-213ENST00000579640 CCL16O15467 120 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 NCK2O43639 380 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 ENDOD1O94919 500 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 F9P00740 461 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 RARGP13631 454 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 TNNT1P13805 278 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 PTPN2P17706 415 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 GBP1P32455 592 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 SULT1E1P49888 294 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 EPHA5P54756 1037 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 HADHQ16836 314 aaKnown RBP11.21□□□□□ -0.61
SS18-213ENST00000579640 TCEAL5Q5H9L2 206 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 MEI1Q5TIA1 1274 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 SYPL2Q5VXT5 272 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 CC2D1AQ6P1N0 951 aaPredicted RBP11.21□□□□□ -0.61
SS18-213ENST00000579640 RSRC2Q7L4I2 434 aaKnown RBP11.21□□□□□ -0.61
SS18-213ENST00000579640 BNIPLQ7Z465 357 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 EDEM1Q92611 657 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 GCNAQ96QF7 691 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 LRRC3Q9BY71 257 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 SMOC2Q9H3U7 446 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 DNAI1Q9UI46 699 aa11.21□□□□□ -0.61
SS18-213ENST00000579640 CCDC66A2RUB6 948 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 CTAGE9A4FU28 777 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 PSTPIP1O43586 416 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 LRCH4O75427 683 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 RFPL2O75678 378 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 FTCDO95954 541 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 F11P03951 625 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 PFKLP17858 780 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 CTNNA2P26232 953 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 CASQ1P31415 396 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms