RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 NOP9Q86U38 636 aaKnown RBP10.72□□□□□ -0.69
SS18-207ENST00000577636 LONP2Q86WA8 852 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 MFSD6LQ8IWD5 586 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 EFCAB13Q8IY85 973 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 TCEAL8Q8IYN2 117 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 SPEM1Q8N4L4 309 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 FAM160A2Q8N612 972 aaPredicted RBP10.72□□□□□ -0.69
SS18-207ENST00000577636 C12orf50Q8NA57 414 aaPredicted RBP10.72□□□□□ -0.69
SS18-207ENST00000577636 SLC20A1Q8WUM9 679 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 RFFLQ8WZ73 363 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 UBXN4Q92575 508 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 HPDLQ96IR7 371 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 PGLYRP2Q96PD5 576 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 SYT11Q9BT88 431 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 IER2Q9BTL4 223 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 PACSIN1Q9BY11 444 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 ARRDC1-AS1Q9H2J1 176 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 CYP3A43Q9HB55 503 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 ASAH2Q9NR71 780 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 CTTNBP2NLQ9P2B4 639 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 NXF1Q9UBU9 619 aaKnown RBP10.72□□□□□ -0.69
SS18-207ENST00000577636 UBQLN1Q9UMX0 589 aaKnown RBP10.72□□□□□ -0.69
SS18-207ENST00000577636 NENFQ9UMX5 172 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 AGAP1Q9UPQ3 857 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 HYOU1Q9Y4L1 999 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 VWA8A3KMH1 1905 aa10.72□□□□□ -0.69
SS18-207ENST00000577636 A0A1W2PRU2 124 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 DPYSL4O14531 572 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 NCANO14594 1321 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 PALMO75781 387 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 MICAL2O94851 1124 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 MMEP08473 750 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 PRLRP16471 622 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 CD58P19256 250 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 POLR2BP30876 1174 aaKnown RBP10.71□□□□□ -0.69
SS18-207ENST00000577636 CNR2P34972 360 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 PNPLA4P41247 253 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 PXNP49023 591 aaPredicted RBP10.71□□□□□ -0.69
SS18-207ENST00000577636 PON2Q15165 354 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 TPGS2Q68CL5 300 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 ACAD10Q6JQN1 1059 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 CCDC70Q6NSX1 233 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 RNF19BQ6ZMZ0 732 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 C1orf127Q8N9H9 656 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 DDX1Q92499 740 aaKnown RBP10.71□□□□□ -0.69
SS18-207ENST00000577636 C18orf25Q96B23 403 aaPredicted RBP10.71□□□□□ -0.69
SS18-207ENST00000577636 ZFYVE19Q96K21 471 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 FAM84AQ96KN4 292 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 ZMAT2Q96NC0 199 aaKnown RBP10.71□□□□□ -0.69
SS18-207ENST00000577636 ARID3AQ99856 593 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 CARD6Q9BX69 1037 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 ISCUQ9H1K1 167 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 C8orf33Q9H7E9 229 aaPredicted RBP10.71□□□□□ -0.69
SS18-207ENST00000577636 APOBEC3GQ9HC16 384 aaKnown RBP10.71□□□□□ -0.69
SS18-207ENST00000577636 TRPV5Q9NQA5 729 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 CISHQ9NSE2 258 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 SLC38A7Q9NVC3 462 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 C2orf42Q9NWW7 574 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 CNTN6Q9UQ52 1028 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 CAPN6Q9Y6Q1 641 aa10.71□□□□□ -0.69
SS18-207ENST00000577636 CTAGE15A4D2H0 777 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 EFCAB8A8MWE9 144 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 K7ESF4 209 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 ENC1O14682 589 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 SYN3O14994 580 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 CTIFO43310 598 aaKnown RBP10.7□□□□□ -0.7
SS18-207ENST00000577636 LSM8O95777 96 aaKnown RBP10.7□□□□□ -0.7
SS18-207ENST00000577636 STAU1O95793 577 aaKnown RBP10.7□□□□□ -0.7
SS18-207ENST00000577636 ATP1A1P05023 1023 aaKnown RBP10.7□□□□□ -0.7
SS18-207ENST00000577636 OR4Q2P0C623 313 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 CTAGE8P0CG41 777 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 ACO1P21399 889 aaKnown RBP10.7□□□□□ -0.7
SS18-207ENST00000577636 PAFAH1B1P43034 410 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 FMO1Q01740 532 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 MRPL58Q14197 206 aaKnown RBP10.7□□□□□ -0.7
SS18-207ENST00000577636 RPS6KA1Q15418 735 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 CLEC16AQ2KHT3 1053 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 ZNF280DQ6N043 979 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 TXNDC11Q6PKC3 985 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 SCARA5Q6ZMJ2 495 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 PEX26Q7Z412 305 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 DAAM2Q86T65 1068 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 CTAGE6Q86UF2 777 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 ARID3BQ8IVW6 561 aaPredicted RBP10.7□□□□□ -0.7
SS18-207ENST00000577636 CTAGE4Q8IX94 777 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 LRRC52Q8N7C0 313 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 MSANTD4Q8NCY6 345 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 APPL2Q8NEU8 664 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 SHKBP1Q8TBC3 707 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 SLC35G2Q8TBE7 412 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 GOLGA1Q92805 767 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 ZNF653Q96CK0 615 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 RSPRY1Q96DX4 576 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 ZNF560Q96MR9 790 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 MMS19Q96T76 1030 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 SELENOOQ9BVL4 669 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 XYLT2Q9H1B5 865 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 SMOC1Q9H4F8 434 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 VRTNQ9H8Y1 702 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 GTSE1Q9NYZ3 720 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms