RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 TMEM110-MUSTN1A8MSY1 372 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 DDX3YO15523 660 aaKnown RBP15.96■□□□□ 0.15
SS18-206ENST00000577572 LRCH4O75427 683 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 ARHGEF15O94989 841 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 GJB6O95452 261 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 FYNP06241 537 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 PBX2P40425 430 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 CETN2P41208 172 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 CLCN4P51793 760 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 PTPROQ16827 1216 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 PABPC1LQ4VXU2 614 aaKnown RBP15.96■□□□□ 0.15
SS18-206ENST00000577572 DCAF6Q58WW2 860 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 PLPP4Q5VZY2 271 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 BTBD8Q5XKL5 378 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 MSANTD2Q6P1R3 559 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 VSIG1Q86XK7 387 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 KATNAL2Q8IYT4 538 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 TTC9BQ8N6N2 239 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 KREMEN2Q8NCW0 462 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 PPP2R3CQ969Q6 453 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 PSMG2Q969U7 264 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 OSBPL9Q96SU4 736 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 NKX2-4Q9H2Z4 354 aa15.96■□□□□ 0.15
SS18-206ENST00000577572 COL4A4P53420 1690 aaPredicted RBP15.95■□□□□ 0.14
SS18-206ENST00000577572 TMEM265A0A087WTH1 108 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 HIDE1A8MVS5 230 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 PAPLNO95428 1278 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 FGF19O95750 216 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 HNRNPA1P09651 372 aaKnown RBP eCLIP15.95■□□□□ 0.14
SS18-206ENST00000577572 RALAP11233 206 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 NCAM1P13591 858 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 PFKLP17858 780 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 GBP1P32455 592 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 RDXP35241 583 aaKnown RBP15.95■□□□□ 0.14
SS18-206ENST00000577572 TUBP50607 506 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 KPNA1P52294 538 aaPredicted RBP15.95■□□□□ 0.14
SS18-206ENST00000577572 COPS2P61201 443 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 TUBB4BP68371 445 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 CKAP4Q07065 602 aaKnown RBP15.95■□□□□ 0.14
SS18-206ENST00000577572 NNTQ13423 1086 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 ACBD5Q5T8D3 534 aaPredicted RBP15.95■□□□□ 0.14
SS18-206ENST00000577572 TRNP1Q6NT89 227 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 KLHDC10Q6PID8 442 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 SCD5Q86SK9 330 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 ELMOD1Q8N336 334 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 LEMD2Q8NC56 503 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 EXD1Q8NHP7 514 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 RNF139Q8WU17 664 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 FAM172AQ8WUF8 416 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 FBXO32Q969P5 355 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 TIFAQ96CG3 184 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 RBM41Q96IZ5 413 aaKnown RBP15.95■□□□□ 0.14
SS18-206ENST00000577572 RPGRIP1Q96KN7 1286 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 NAP1L3Q99457 506 aaPredicted RBP15.95■□□□□ 0.14
SS18-206ENST00000577572 GOLPH3Q9H4A6 298 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 MRFAP1Q9Y605 127 aa15.95■□□□□ 0.14
SS18-206ENST00000577572 SOBPA7XYQ1 873 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 ZNF487B1APH4 448 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 KCNK3O14649 394 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 MDM4O15151 490 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 PRPSAP2O60256 369 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 GRAP2O75791 330 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 IGLV3-25P01717 112 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 LRG1P02750 347 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 HMGA1P17096 107 aaKnown RBP15.94■□□□□ 0.14
SS18-206ENST00000577572 MIPP30301 263 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 CA8P35219 290 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 GPR15P49685 360 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 ZNF135P52742 658 aaPredicted RBP15.94■□□□□ 0.14
SS18-206ENST00000577572 SLC25A11Q02978 314 aaKnown RBP15.94■□□□□ 0.14
SS18-206ENST00000577572 TWF1Q12792 350 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 TAF10Q12962 218 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 TAF12Q16514 161 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 LRIT3Q3SXY7 679 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 SND1Q7KZF4 910 aaKnown RBP eCLIP15.94■□□□□ 0.14
SS18-206ENST00000577572 RCOR2Q8IZ40 523 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 RASGEF1CQ8N431 466 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 STKLD1Q8NE28 680 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 ACTRT1Q8TDG2 376 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 SLC22A17Q8WUG5 538 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 NTAN1Q96AB6 310 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 CFAP57Q96MR6 1250 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 SMOC2Q9H3U7 446 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 PRDM16Q9HAZ2 1276 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 ZDHHC7Q9NXF8 308 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 LMCD1Q9NZU5 365 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 MTUS1Q9ULD2 1270 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 USP18Q9UMW8 372 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 USTQ9Y2C2 406 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 EFR3BQ9Y2G0 817 aa15.94■□□□□ 0.14
SS18-206ENST00000577572 NCK2O43639 380 aa15.93■□□□□ 0.14
SS18-206ENST00000577572 CLASP2O75122 1294 aaKnown RBP15.93■□□□□ 0.14
SS18-206ENST00000577572 ZRANB2O95218 330 aaKnown RBP eCLIP15.93■□□□□ 0.14
SS18-206ENST00000577572 C8AP07357 584 aa15.93■□□□□ 0.14
SS18-206ENST00000577572 SLC2A3P11169 496 aa15.93■□□□□ 0.14
SS18-206ENST00000577572 PTPN7P35236 360 aa15.93■□□□□ 0.14
SS18-206ENST00000577572 PAFAH1B1P43034 410 aa15.93■□□□□ 0.14
SS18-206ENST00000577572 SULT1E1P49888 294 aa15.93■□□□□ 0.14
SS18-206ENST00000577572 HDAC4P56524 1084 aa15.93■□□□□ 0.14
SS18-206ENST00000577572 USP46P62068 366 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms