RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 DAZAP1Q96EP5 407 aaKnown RBP6.25□□□□□ -1.41
NUP88-213ENST00000576862 SLC39A13Q96H72 371 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 TNIP3Q96KP6 325 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 MGAT4CQ9UBM8 478 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 STEAP1Q9UHE8 339 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 ZMYND8Q9ULU4 1186 aaPredicted RBP6.25□□□□□ -1.41
NUP88-213ENST00000576862 CCDC194A0A1B0GVG4 234 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 FAM234BA2RU67 622 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 SMIM22K7EJ46 135 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 MASP2O00187 686 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 PRKCGP05129 697 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 EEF1GP26641 437 aaKnown RBP6.24□□□□□ -1.41
NUP88-213ENST00000576862 CD38P28907 300 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 C21orf58P58505 322 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 MTAPQ13126 283 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 ACOX1Q15067 660 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 MPEG1Q2M385 716 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 COLEC12Q5KU26 742 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 FAXCQ5TGI0 409 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 GRHL2Q6ISB3 625 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 MRNIPQ6NTE8 343 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 CHSY1Q86X52 802 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 LINC01465Q8N7H1 131 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 DEPTORQ8TB45 409 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 SNX27Q96L92 541 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 WDR24Q96S15 920 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 ELAC2Q9BQ52 826 aaKnown RBP6.24□□□□□ -1.41
NUP88-213ENST00000576862 ZCWPW1Q9H0M4 648 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 ZNF700Q9H0M5 742 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 PCDHAC1Q9H158 963 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 CERS4Q9HA82 394 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 RGL1Q9NZL6 768 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 PCDHGB2Q9Y5G2 931 aa6.24□□□□□ -1.41
NUP88-213ENST00000576862 CGB1A6NKQ9 187 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 PLIN1O60240 522 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 COQ9O75208 318 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 LATS1O95835 1130 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 APEHP13798 732 aaKnown RBP6.23□□□□□ -1.41
NUP88-213ENST00000576862 ZNF37AP17032 561 aaPredicted RBP6.23□□□□□ -1.41
NUP88-213ENST00000576862 EGR1P18146 543 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 SERPINB3P29508 390 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 SLC5A2P31639 672 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 HSPA7P48741 367 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 EIF4A1P60842 406 aaKnown RBP6.23□□□□□ -1.41
NUP88-213ENST00000576862 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.23□□□□□ -1.41
NUP88-213ENST00000576862 PRAMEF17Q5VTA0 474 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 XRRA1Q6P2D8 792 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 PTF1AQ7RTS3 328 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 FAM186BQ8IYM0 893 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 FSTL5Q8N475 847 aaPredicted RBP6.23□□□□□ -1.41
NUP88-213ENST00000576862 CCDC150Q8NCX0 1101 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 RITA1Q96K30 269 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 EIF2AQ9BY44 585 aaKnown RBP6.23□□□□□ -1.41
NUP88-213ENST00000576862 TMEM8AQ9HCN3 771 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 FRMD4BQ9Y2L6 1034 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 FNDC1Q4ZHG4 1894 aaPredicted RBP6.23□□□□□ -1.41
NUP88-213ENST00000576862 KAT6AQ92794 2004 aa6.23□□□□□ -1.41
NUP88-213ENST00000576862 OR2W5A6NFC9 320 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 TMPRSS11DO60235 418 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 WDR47O94967 919 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 PECAM1P16284 738 aaPredicted RBP6.22□□□□□ -1.41
NUP88-213ENST00000576862 ABCB4P21439 1286 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 YY1P25490 414 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 GPS1Q13098 491 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 ST3GAL2Q16842 350 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 SLC5A9Q2M3M2 681 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 KRT73Q86Y46 540 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 ZNF566Q969W8 418 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 C18orf8Q96DM3 657 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 EDC3Q96F86 508 aaKnown RBP6.22□□□□□ -1.41
NUP88-213ENST00000576862 KAZALD1Q96I82 304 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 NLRC4Q9NPP4 1024 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 SNX15Q9NRS6 342 aa6.22□□□□□ -1.41
NUP88-213ENST00000576862 ARHGEF17Q96PE2 2063 aaPredicted RBP6.22□□□□□ -1.41
NUP88-213ENST00000576862 CA12O43570 354 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 PLA2G6O60733 806 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 MT-CO3P00414 261 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 IFIT2P09913 472 aaKnown RBP6.21□□□□□ -1.42
NUP88-213ENST00000576862 TMEM225BP0DP42 221 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 ATF7P17544 494 aaPredicted RBP6.21□□□□□ -1.42
NUP88-213ENST00000576862 ADRA1DP25100 572 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 PBX1P40424 430 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 COPB1P53618 953 aaKnown RBP6.21□□□□□ -1.42
NUP88-213ENST00000576862 TUBA4AP68366 448 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 CCDC142Q17RM4 750 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 ARHGAP15Q53QZ3 475 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 DGKKQ5KSL6 1271 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 TMTC4Q5T4D3 741 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 ZNF66Q6ZN08 573 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 PNPLA1Q8N8W4 532 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 ABHD5Q8WTS1 349 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 PRR11Q96HE9 360 aaPredicted RBP6.21□□□□□ -1.42
NUP88-213ENST00000576862 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.21□□□□□ -1.42
NUP88-213ENST00000576862 TFCP2L1Q9NZI6 479 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 TMOD4Q9NZQ9 345 aa6.21□□□□□ -1.42
NUP88-213ENST00000576862 PRRT4C9JH25 899 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 POC1B-GALNT4F8VUJ3 575 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 PODXLO00592 558 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 ADAMTS3O15072 1205 aa6.2□□□□□ -1.42
NUP88-213ENST00000576862 CCNT2O60583 730 aaKnown RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms