RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 INCA1Q0VD86 236 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 ADAM9Q13443 819 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 LY6G5CQ5SRR4 150 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 RHBDF2Q6PJF5 856 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 C11orf74Q86VG3 221 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 CCDC33Q8N5R6 958 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 ZMIZ2Q8NF64 920 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 JAKMIP2Q96AA8 810 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 ZFRQ96KR1 1074 aaKnown RBP14.47□□□□□ -0.09
CCDC40-216ENST00000576241 SCNM1Q9BWG6 230 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 GOLPH3LQ9H4A5 285 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 SMOC1Q9H4F8 434 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 ARHGEF4Q9NR80 690 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 MMP17Q9ULZ9 603 aa14.47□□□□□ -0.09
CCDC40-216ENST00000576241 LOC400499M0QZD8 3231 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 BEST1O76090 585 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 ALDH1A2O94788 518 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 CD58P19256 250 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 GBP1P32455 592 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 GTF2H1P32780 548 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 MPLP40238 635 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 GRIA2P42262 883 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 SLC6A11P48066 632 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 KDSRQ06136 332 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 PPP3CAQ08209 521 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 GOLGA8FQ08AF8 430 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 GOLGA8DPQ0D2H9 430 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 PLK5Q496M5 336 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 HSF5Q4G112 596 aaPredicted RBP14.46□□□□□ -0.09
CCDC40-216ENST00000576241 PREPLQ4J6C6 727 aaPredicted RBP14.46□□□□□ -0.09
CCDC40-216ENST00000576241 USP39Q53GS9 565 aaKnown RBP14.46□□□□□ -0.09
CCDC40-216ENST00000576241 RNF43Q68DV7 783 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 ANO7Q6IWH7 933 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 TTC30AQ86WT1 665 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 TAS1R2Q8TE23 839 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 CYFIP2Q96F07 1278 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 HNRNPABQ99729 332 aaKnown RBP14.46□□□□□ -0.09
CCDC40-216ENST00000576241 DUSP9Q99956 384 aaKnown RBP14.46□□□□□ -0.09
CCDC40-216ENST00000576241 TMEM8AQ9HCN3 771 aa14.46□□□□□ -0.09
CCDC40-216ENST00000576241 DCLK1O15075 740 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 HOXC11O43248 304 aaPredicted RBP14.45□□□□□ -0.1
CCDC40-216ENST00000576241 STX10O60499 249 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 KLF8O95600 359 aaPredicted RBP14.45□□□□□ -0.1
CCDC40-216ENST00000576241 ACO1P21399 889 aaKnown RBP14.45□□□□□ -0.1
CCDC40-216ENST00000576241 LAMA1P25391 3075 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 TIE1P35590 1138 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 TNFRSF4P43489 277 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 CRY1Q16526 586 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 EDRF1Q3B7T1 1238 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 ZCWPW2Q504Y3 356 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 EOGTQ5NDL2 527 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 CLEC20AQ6ZU45 233 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 NUDT18Q6ZVK8 323 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 C12orf40Q86WS4 652 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 BBS7Q8IWZ6 715 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 ALLCQ8N6M5 410 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 CNOT6LQ96LI5 555 aaKnown RBP14.45□□□□□ -0.1
CCDC40-216ENST00000576241 TWNKQ96RR1 684 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 TPSD1Q9BZJ3 242 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 DUSP15Q9H1R2 295 aaPredicted RBP14.45□□□□□ -0.1
CCDC40-216ENST00000576241 APOBEC3GQ9HC16 384 aaKnown RBP14.45□□□□□ -0.1
CCDC40-216ENST00000576241 GDPD2Q9HCC8 539 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 PNPLA8Q9NP80 782 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 SPHK2Q9NRA0 654 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 VPS45Q9NRW7 570 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 RMND1Q9NWS8 449 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 LSM7Q9UK45 103 aaKnown RBP14.45□□□□□ -0.1
CCDC40-216ENST00000576241 SCML2Q9UQR0 700 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 PCDHA5Q9Y5H7 936 aa14.45□□□□□ -0.1
CCDC40-216ENST00000576241 GOLGA6L4A6NEF3 574 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 CETN3O15182 167 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 CYP26A1O43174 497 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 CILPO75339 1184 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 EPB41P11171 864 aaKnown RBP14.44□□□□□ -0.1
CCDC40-216ENST00000576241 ATP5C1P36542 298 aaKnown RBP14.44□□□□□ -0.1
CCDC40-216ENST00000576241 MXI1P50539 228 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 MESP2Q0VG99 397 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 ANO4Q32M45 955 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 PLA2G2CQ5R387 149 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 KRT39Q6A163 491 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 GPRIN1Q7Z2K8 1008 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 RASSF3Q86WH2 238 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 SFTPA1Q8IWL2 248 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 SMYD4Q8IYR2 804 aaPredicted RBP14.44□□□□□ -0.1
CCDC40-216ENST00000576241 TTC39CQ8N584 583 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 IL17RCQ8NAC3 791 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 TXNDC5Q8NBS9 432 aaKnown RBP14.44□□□□□ -0.1
CCDC40-216ENST00000576241 POLMQ9NP87 494 aaPredicted RBP14.44□□□□□ -0.1
CCDC40-216ENST00000576241 CYLDQ9NQC7 956 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 DEC1Q9P2X7 70 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 INVSQ9Y283 1065 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 GTF3C3Q9Y5Q9 886 aa14.44□□□□□ -0.1
CCDC40-216ENST00000576241 TBC1D3BA6NDS4 549 aa14.43□□□□□ -0.1
CCDC40-216ENST00000576241 HHLA1C9JL84 531 aa14.43□□□□□ -0.1
CCDC40-216ENST00000576241 TBX18O95935 607 aa14.43□□□□□ -0.1
CCDC40-216ENST00000576241 KIR2DL1P43626 348 aaPredicted RBP14.43□□□□□ -0.1
CCDC40-216ENST00000576241 PGFP49763 221 aa14.43□□□□□ -0.1
CCDC40-216ENST00000576241 CREB5Q02930 508 aa14.43□□□□□ -0.1
CCDC40-216ENST00000576241 ZNF394Q53GI3 561 aa14.43□□□□□ -0.1
CCDC40-216ENST00000576241 HTR3DQ70Z44 454 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms