RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 TTLL2Q9BWV7 592 aa25.14■■□□□ 1.62
ATPAF1-213ENST00000574428 MAN1C1Q9NR34 630 aa25.14■■□□□ 1.62
ATPAF1-213ENST00000574428 COMMD8Q9NX08 183 aa25.14■■□□□ 1.62
ATPAF1-213ENST00000574428 MYO7AQ13402 2215 aa25.14■■□□□ 1.61
ATPAF1-213ENST00000574428 CSH1P0DML2 217 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 CSH2P0DML3 217 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 TCF4P15884 667 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 PITX1P78337 314 aaPredicted RBP25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 MON1AQ86VX9 555 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 PSMB7Q99436 277 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 OSER1Q9NX31 292 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 COLQQ9Y215 455 aaPredicted RBP25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 CDH23Q9H251 3354 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 ZNF638Q14966 1978 aaKnown RBP25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 NOS2P35228 1153 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 PTPN9P43378 593 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 MARCKSL1P49006 195 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 SULT1E1P49888 294 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 TAS2R40P59535 323 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 PLD1Q13393 1074 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 RPS6KA1Q15418 735 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 TAF12Q16514 161 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 BTBD8Q5XKL5 378 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 CC2D1AQ6P1N0 951 aaPredicted RBP25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 FAM172AQ8WUF8 416 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 SLC22A17Q8WUG5 538 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 CD101Q93033 1021 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 HES6Q96HZ4 224 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 TBCBQ99426 244 aa25.13■■□□□ 1.61
ATPAF1-213ENST00000574428 LRCH4O75427 683 aa25.12■■□□□ 1.61
ATPAF1-213ENST00000574428 LRG1P02750 347 aa25.12■■□□□ 1.61
ATPAF1-213ENST00000574428 SLC25A52Q3SY17 297 aa25.12■■□□□ 1.61
ATPAF1-213ENST00000574428 OTUD1Q5VV17 481 aaPredicted RBP25.12■■□□□ 1.61
ATPAF1-213ENST00000574428 DNAJB7Q7Z6W7 309 aaPredicted RBP25.12■■□□□ 1.61
ATPAF1-213ENST00000574428 KRT35Q92764 455 aa25.12■■□□□ 1.61
ATPAF1-213ENST00000574428 PSMG2Q969U7 264 aa25.12■■□□□ 1.61
ATPAF1-213ENST00000574428 SLITRK1Q96PX8 696 aa25.12■■□□□ 1.61
ATPAF1-213ENST00000574428 TLE6Q9H808 572 aa25.12■■□□□ 1.61
ATPAF1-213ENST00000574428 RNF8O76064 485 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 ARHGAP18Q8N392 663 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 ADAM32Q8TC27 787 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 NPY6RQ99463 290 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 TRIM62Q9BVG3 475 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 ZNF576Q9H609 170 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 ABCC13Q9NSE7 274 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 EHD2Q9NZN4 543 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 CALCOCO1Q9P1Z2 691 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 STAP1Q9ULZ2 295 aa25.11■■□□□ 1.61
ATPAF1-213ENST00000574428 GJC1P36383 396 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 NRIP1P48552 1158 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 LRIT3Q3SXY7 679 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 PPM1LQ5SGD2 360 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 MRPL38Q96DV4 380 aaKnown RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 TRMT2BQ96GJ1 504 aaKnown RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 MYRFLQ96LU7 910 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 TLR8Q9NR97 1041 aaKnown RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 NUDT5Q9UKK9 219 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 HCFC2Q9Y5Z7 792 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 SYNJ2BP-COX16A0A087WUM0 186 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 DDX3YO15523 660 aaKnown RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 RFPL2O75678 378 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 DESP17661 470 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 CXCR5P32302 372 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 CTNNA1P35221 906 aaKnown RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 ATXN1P54253 815 aaKnown RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 HDAC4P56524 1084 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 RBM10P98175 930 aaKnown RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 ACAP1Q15027 740 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 PAPD7Q5XG87 772 aaKnown RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 BEND5Q7L4P6 421 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 ITIH5Q86UX2 942 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 CENPIQ92674 756 aaPredicted RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 NT5C3BQ969T7 300 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 ZNF512Q96ME7 567 aaPredicted RBP25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 PLEKHA4Q9H4M7 779 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 COX16Q9P0S2 106 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 SNX12Q9UMY4 172 aa25.1■■□□□ 1.61
ATPAF1-213ENST00000574428 A0A1W2PPC1 479 aa25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 MIF4GDA9UHW6 222 aaKnown RBP25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 M0QYT0 321 aa25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 CCL16O15467 120 aa25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 C1RP00736 705 aa25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 MIPP30301 263 aa25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 DUSP6Q16828 381 aa25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 ALG3Q92685 438 aa25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 ZNF334Q9HCZ1 680 aaPredicted RBP25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 PCSK1NQ9UHG2 260 aa25.09■■□□□ 1.61
ATPAF1-213ENST00000574428 SRGAP2O75044 1071 aa25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 URI1O94763 535 aaPredicted RBP25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 CTNNA2P26232 953 aa25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 GTF2F1P35269 517 aaKnown RBP eCLIP25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 AMPD2Q01433 879 aa25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 SLC25A11Q02978 314 aaKnown RBP25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 NME3Q13232 169 aa25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 TXNRD3NBQ6F5E7 133 aa25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 RHOT1Q8IXI2 618 aa25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 DQX1Q8TE96 717 aaKnown RBP25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 FAM204AQ9H8W3 233 aa25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 ASB3Q9Y575 518 aa25.08■■□□□ 1.61
ATPAF1-213ENST00000574428 PCDHA3Q9Y5H8 950 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms