RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 HDCP19113 662 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 CCNE1P24864 410 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 COL8A1P27658 744 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 PRCPP42785 496 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 RPS9P46781 194 aaKnown RBP7.9□□□□□ -1.14
NUP88-205ENST00000572809 RAP1GAPP47736 663 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 GCLMP48507 274 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 ENPEPQ07075 957 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 EDRF1Q3B7T1 1238 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 ZCWPW2Q504Y3 356 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 ZNF658Q5TYW1 1059 aaPredicted RBP7.9□□□□□ -1.14
NUP88-205ENST00000572809 C1orf228Q6PIY5 440 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 DENND5BQ6ZUT9 1274 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 FRMD5Q7Z6J6 570 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 ELOA2Q8IYF1 753 aaPredicted RBP7.9□□□□□ -1.14
NUP88-205ENST00000572809 SMYD4Q8IYR2 804 aaPredicted RBP7.9□□□□□ -1.14
NUP88-205ENST00000572809 CRYBG2Q8N1P7 616 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 B3GALNT2Q8NCR0 500 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 TTC8Q8TAM2 541 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 SPATA20Q8TB22 786 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 ERCC4Q92889 916 aaPredicted RBP7.9□□□□□ -1.14
NUP88-205ENST00000572809 USP13Q92995 863 aaPredicted RBP7.9□□□□□ -1.14
NUP88-205ENST00000572809 SMARCE1Q969G3 411 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 IFT43Q96FT9 208 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 ZFYVE19Q96K21 471 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 TNIP3Q96KP6 325 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 B3GNT5Q9BYG0 378 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 GTPBP4Q9BZE4 634 aaKnown RBP7.9□□□□□ -1.14
NUP88-205ENST00000572809 PHACTR1Q9C0D0 580 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 SDCBP2Q9H190 292 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 DPEP3Q9H4B8 488 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 SMYD3Q9H7B4 428 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 KIF9Q9HAQ2 790 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 LMAN1LQ9HAT1 526 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 TRPC7Q9HCX4 862 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 SPATA6Q9NWH7 488 aaPredicted RBP7.9□□□□□ -1.14
NUP88-205ENST00000572809 GTSE1Q9NYZ3 720 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 MKL2Q9ULH7 1088 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 CCL26Q9Y258 94 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 DYRK1BQ9Y463 629 aa7.9□□□□□ -1.14
NUP88-205ENST00000572809 COL4A3Q01955 1670 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 TRAV19A0A0A6YYK7 116 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 F8VP50 259 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 SPECC1L-ADORA2AF8WAN1 911 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 CLDN5O00501 218 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 TADA3O75528 432 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 ASS1P00966 412 aaKnown RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 TRIM49P0CI25 452 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 TRIM49CP0CI26 452 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 GTF2H1P32780 548 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 PIK3CAP42336 1068 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 SOX9P48436 509 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 PPP3CCP48454 512 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 NOP14P78316 857 aaKnown RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 FKBP3Q00688 224 aaKnown RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 CSTF1Q05048 431 aaKnown RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 TNK2Q07912 1038 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 PPP3CAQ08209 521 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 POU4F2Q12837 409 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 ZNF268Q14587 947 aaPredicted RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 ITPRIPL2Q3MIP1 535 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 COBLL1Q53SF7 1204 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 KRT39Q6A163 491 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 ANKRD40Q6AI12 368 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 ISM2Q6H9L7 571 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 SPOPLQ6IQ16 392 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 CC2D1AQ6P1N0 951 aaPredicted RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 SCARA5Q6ZMJ2 495 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 ACOT1Q86TX2 421 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 UNC93AQ86WB7 457 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 RALGPS2Q86X27 583 aaPredicted RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 MAML2Q8IZL2 1156 aaPredicted RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 NUP93Q8N1F7 819 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 ARL14EPQ8N8R7 260 aaPredicted RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 CCDC150Q8NCX0 1101 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 TAS1R2Q8TE23 839 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 NKD2Q969F2 451 aaPredicted RBP7.89□□□□□ -1.15
NUP88-205ENST00000572809 EEF2KMTQ96G04 330 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 MSANTD3Q96H12 275 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 DMRTB1Q96MA1 342 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 KCNK16Q96T55 309 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 TSG101Q99816 390 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 FAM83CQ9BQN1 747 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 MED10Q9BTT4 135 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 TTLL2Q9BWV7 592 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 IMPG2Q9BZV3 1241 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 ZNF518BQ9C0D4 1074 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 ELOVL4Q9GZR5 314 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 SEMA4AQ9H3S1 761 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 MMRN2Q9H8L6 949 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 TMEM8AQ9HCN3 771 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 TRPM5Q9NZQ8 1165 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 GCNT4Q9P109 453 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 FBXO4Q9UKT5 387 aa7.89□□□□□ -1.15
NUP88-205ENST00000572809 ATP8B3O60423 1300 aa7.88□□□□□ -1.15
NUP88-205ENST00000572809 C2orf78A6NCI8 922 aa7.88□□□□□ -1.15
NUP88-205ENST00000572809 ZNF840PA6NDX5 716 aa7.88□□□□□ -1.15
NUP88-205ENST00000572809 SHISA8B8ZZ34 492 aa7.88□□□□□ -1.15
NUP88-205ENST00000572809 TNFRSF10BO14763 440 aa7.88□□□□□ -1.15
NUP88-205ENST00000572809 STX10O60499 249 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms