RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GPR158Q5T848 1215 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 PPP1R26Q5T8A7 1209 aaPredicted RBP14.69□□□□□ -0.06
CLN3-235ENST00000568497 TXNDC8Q6A555 127 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 CCDC150Q8NCX0 1101 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 RIN3Q8TB24 985 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 NDRG1Q92597 394 aaKnown RBP14.69□□□□□ -0.06
CLN3-235ENST00000568497 HEXIM2Q96MH2 286 aaKnown RBP14.69□□□□□ -0.06
CLN3-235ENST00000568497 NT5C1BQ96P26 610 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 LRRC3BQ96PB8 259 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 SLC22A12Q96S37 553 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 ZSWIM1Q9BR11 485 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 HSD3B7Q9H2F3 369 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 THAP9Q9H5L6 903 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 TRPC7Q9HCX4 862 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 POLR3BQ9NW08 1133 aaPredicted RBP14.69□□□□□ -0.06
CLN3-235ENST00000568497 ANO10Q9NW15 660 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 MAFFQ9ULX9 164 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 PCDHB4Q9Y5E5 795 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 SPAARA0A1B0GVQ0 90 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 PATE3B3GLJ2 98 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 PIK3R2O00459 728 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 CDX4O14627 284 aaPredicted RBP14.68□□□□□ -0.06
CLN3-235ENST00000568497 PRAMEF12O95522 483 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 ABL1P00519 1130 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 ATP1A3P13637 1013 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 CD19P15391 556 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 ACO1P21399 889 aaKnown RBP14.68□□□□□ -0.06
CLN3-235ENST00000568497 BRD2P25440 801 aaKnown RBP14.68□□□□□ -0.06
CLN3-235ENST00000568497 RDXP35241 583 aaKnown RBP14.68□□□□□ -0.06
CLN3-235ENST00000568497 ENPEPQ07075 957 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 TNK2Q07912 1038 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 VEPH1Q14D04 833 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 KRT31Q15323 416 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 FOXR2Q6PJQ5 311 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 C4orf50Q6ZRC1 276 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 ARID3BQ8IVW6 561 aaPredicted RBP14.68□□□□□ -0.06
CLN3-235ENST00000568497 CAMKK1Q8N5S9 505 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 UBR7Q8N806 425 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 UBA3Q8TBC4 463 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 TFAP2BQ92481 460 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 CYP2S1Q96SQ9 504 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 TUBGCP2Q9BSJ2 902 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 FUCA2Q9BTY2 467 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 NT5C1AQ9BXI3 368 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 CYP3A43Q9HB55 503 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 UBE2TQ9NPD8 197 aaPredicted RBP14.68□□□□□ -0.06
CLN3-235ENST00000568497 DACH1Q9UI36 760 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 ASH1LQ9NR48 2969 aaKnown RBP14.68□□□□□ -0.06
CLN3-235ENST00000568497 SMG1Q96Q15 3661 aaKnown RBP14.68□□□□□ -0.06
CLN3-235ENST00000568497 ITPR1Q14643 2758 aa14.68□□□□□ -0.06
CLN3-235ENST00000568497 OBSL1O75147 1896 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 C2orf78A6NCI8 922 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 FGFR1OPO95684 399 aaKnown RBP14.67□□□□□ -0.06
CLN3-235ENST00000568497 F11P03951 625 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 MAPK8P45983 427 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 KCNMA1Q12791 1236 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 GRSF1Q12849 480 aaKnown RBP eCLIP14.67□□□□□ -0.06
CLN3-235ENST00000568497 NFKBIBQ15653 356 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 MAN2A1Q16706 1144 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 GOLGA7BQ2TAP0 167 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 KLHL40Q2TBA0 621 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 CFAP221Q4G0U5 840 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 VWA3BQ502W6 1294 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 TCP11X2Q5H9J9 407 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 TMEM270Q6UE05 265 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 CYP2U1Q7Z449 544 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 DHX40Q8IX18 779 aaKnown RBP14.67□□□□□ -0.06
CLN3-235ENST00000568497 CRYBG2Q8N1P7 616 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 MAB21L3Q8N8X9 362 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 SPATA18Q8TC71 538 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 ENOX1Q8TC92 643 aaKnown RBP14.67□□□□□ -0.06
CLN3-235ENST00000568497 C2orf15Q8WU43 125 aaKnown RBP14.67□□□□□ -0.06
CLN3-235ENST00000568497 CYFIP2Q96F07 1278 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 SLC46A2Q9BY10 475 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 SIX2Q9NPC8 291 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 CHORDC1Q9UHD1 332 aaPredicted RBP14.67□□□□□ -0.06
CLN3-235ENST00000568497 CCL26Q9Y258 94 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 INVSQ9Y283 1065 aa14.67□□□□□ -0.06
CLN3-235ENST00000568497 ASCC3Q8N3C0 2202 aaKnown RBP14.67□□□□□ -0.06
CLN3-235ENST00000568497 ZNF638Q14966 1978 aaKnown RBP14.67□□□□□ -0.06
CLN3-235ENST00000568497 RNF40O75150 1001 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 NOL4O94818 638 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 KRT5P13647 590 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 PON1P27169 355 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 RPL10AP62906 217 aaKnown RBP14.66□□□□□ -0.06
CLN3-235ENST00000568497 IRX4P78413 519 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 ITPRIPL2Q3MIP1 535 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 CDKAL1Q5VV42 579 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 DPY19L2P1Q6NXN4 242 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 TTC30AQ86WT1 665 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 TMEM176AQ96HP8 235 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 BBC3Q96PG8 261 aaPredicted RBP14.66□□□□□ -0.06
CLN3-235ENST00000568497 ABCB6Q9NP58 842 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 OBP2AQ9NY56 170 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 NUDT5Q9UKK9 219 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 PCNX2A6NKB5 2137 aa14.66□□□□□ -0.06
CLN3-235ENST00000568497 ANAPC1Q9H1A4 1944 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 ANXA13P27216 316 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 USP8P40818 1118 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 MAGEA11P43364 429 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms