RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 MED7O43513 233 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 CAVIN2O95810 425 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 LCP1P13796 627 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 GLULP15104 373 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 CYP11B1P15538 503 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 CD72P21854 359 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 CTHP32929 405 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 CLCN5P51795 746 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 YWHAGP61981 247 aaKnown RBP eCLIP10.29□□□□□ -0.76
CLK3-220ENST00000567992 PDCLQ13371 301 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 FZD5Q13467 585 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 RUNX3Q13761 415 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 PDGFRLQ15198 375 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 GAB4Q2WGN9 574 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 ASTLQ6HA08 431 aaPredicted RBP10.29□□□□□ -0.76
CLK3-220ENST00000567992 NOP9Q86U38 636 aaKnown RBP10.29□□□□□ -0.76
CLK3-220ENST00000567992 PASD1Q8IV76 773 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 CCDC105Q8IYK2 499 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 SIX6OS1Q8N1H7 587 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 FLCNQ8NFG4 579 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 PJA1Q8NG27 643 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 TTC8Q8TAM2 541 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 EPS8L1Q8TE68 723 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 STK32AQ8WU08 396 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 LINC00597Q9H2U6 94 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 MFSD1Q9H3U5 465 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 LTB4R2Q9NPC1 389 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 GKN1Q9NS71 199 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 THG1LQ9NWX6 298 aaKnown RBP10.29□□□□□ -0.76
CLK3-220ENST00000567992 DUS2Q9NX74 493 aaKnown RBP10.29□□□□□ -0.76
CLK3-220ENST00000567992 DLGAP2Q9P1A6 1054 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 TJP2Q9UDY2 1190 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 NOCTQ9UK39 431 aaKnown RBP10.29□□□□□ -0.76
CLK3-220ENST00000567992 DAAM1Q9Y4D1 1078 aa10.29□□□□□ -0.76
CLK3-220ENST00000567992 VPS13AQ96RL7 3174 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 KANSL1LA0AUZ9 987 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 E5RJQ4 531 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 SPECC1L-ADORA2AF8WAN1 911 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 PAPSS1O43252 624 aaPredicted RBP10.28□□□□□ -0.76
CLK3-220ENST00000567992 FYNP06241 537 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 TARSP26639 723 aaKnown RBP10.28□□□□□ -0.76
CLK3-220ENST00000567992 AVPR2P30518 371 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 CDH5P33151 784 aaPredicted RBP10.28□□□□□ -0.76
CLK3-220ENST00000567992 SOX5P35711 763 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 PTK2Q05397 1052 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 ITPRIPL2Q3MIP1 535 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 C10orf120Q5SQS8 335 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 CC2D1AQ6P1N0 951 aaPredicted RBP10.28□□□□□ -0.76
CLK3-220ENST00000567992 TMEM110Q86TL2 294 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 DDX42Q86XP3 938 aaKnown RBP eCLIP10.28□□□□□ -0.76
CLK3-220ENST00000567992 SUGP1Q8IWZ8 645 aaKnown RBP10.28□□□□□ -0.76
CLK3-220ENST00000567992 ARHGAP18Q8N392 663 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 C1orf131Q8NDD1 294 aaKnown RBP10.28□□□□□ -0.76
CLK3-220ENST00000567992 TTC16Q8NEE8 873 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 CSGALNACT1Q8TDX6 532 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 IRGQQ8WZA9 623 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 MSANTD3Q96H12 275 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 SHDQ96IW2 340 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 PIWIL1Q96J94 861 aaKnown RBP10.28□□□□□ -0.76
CLK3-220ENST00000567992 CPXM1Q96SM3 734 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 LHX5Q9H2C1 402 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 ECT2Q9H8V3 914 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 NLRC4Q9NPP4 1024 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 RAPGEFL1Q9UHV5 662 aa10.28□□□□□ -0.76
CLK3-220ENST00000567992 MYOFQ9NZM1 2061 aa10.27□□□□□ -0.76
CLK3-220ENST00000567992 E2F8A0AVK6 867 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 GFPT2O94808 682 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 FBXO21O94952 628 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 CYP17A1P05093 508 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 IRF1P10914 325 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 RALAP11233 206 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 CHRNB2P17787 502 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 GJA4P35212 333 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 ATP5C1P36542 298 aaKnown RBP10.27□□□□□ -0.77
CLK3-220ENST00000567992 PBX1P40424 430 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 IFNAR2P48551 515 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 BPIFB4P59827 614 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 FANCCQ00597 558 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 EFEMP1Q12805 493 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 NR1I3Q14994 352 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 PTPN20Q4JDL3 420 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 TAF3Q5VWG9 929 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 BSPRYQ5W0U4 402 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 NAIF1Q69YI7 327 aaPredicted RBP10.27□□□□□ -0.77
CLK3-220ENST00000567992 MSANTD2Q6P1R3 559 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 LRSAM1Q6UWE0 723 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 ZNF852Q6ZMS4 543 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 Q6ZNB5 142 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 RALGPS2Q86X27 583 aaPredicted RBP10.27□□□□□ -0.77
CLK3-220ENST00000567992 MIB1Q86YT6 1006 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 BBS7Q8IWZ6 715 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 SCUBE3Q8IX30 993 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 NEK11Q8NG66 645 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 OLIG1Q8TAK6 271 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 SLC20A1Q8WUM9 679 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 BAP1Q92560 729 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 EDEM1Q92611 657 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 ATP2A3Q93084 1043 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 P2RY11Q96G91 374 aa10.27□□□□□ -0.77
CLK3-220ENST00000567992 CDK5RAP1Q96SZ6 601 aaKnown RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms