RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 ARMCX6Q7L4S7 300 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 TTC30AQ86WT1 665 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 MDGA1Q8NFP4 955 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 ATP2A3Q93084 1043 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 ELMO3Q96BJ8 720 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 NAP1L5Q96NT1 182 aaPredicted RBP12.03□□□□□ -0.48
CLN3-226ENST00000567160 CRACR2AQ9BSW2 395 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 IFNKQ9P0W0 207 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 MBD1Q9UIS9 605 aaPredicted RBP12.03□□□□□ -0.48
CLN3-226ENST00000567160 APOBEC2Q9Y235 224 aaKnown RBP12.03□□□□□ -0.48
CLN3-226ENST00000567160 R3HCC1Q9Y3T6 440 aaKnown RBP12.03□□□□□ -0.48
CLN3-226ENST00000567160 PLXND1Q9Y4D7 1925 aa12.03□□□□□ -0.48
CLN3-226ENST00000567160 PLXNB3Q9ULL4 1909 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 LRRC10BA6NIK2 292 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 AP5Z1O43299 807 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 VNN1O95497 513 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 HLA-DRAP01903 254 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 P2RY2P41231 377 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 FAM193AP78312 1265 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 UBXN1Q04323 297 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 NR1H3Q13133 447 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 SLC14A1Q13336 389 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 TRPC3Q13507 836 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 NCOA4Q13772 614 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 FKBP15Q5T1M5 1219 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 C9orf57Q5W0N0 161 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 TMEFF1Q8IYR6 380 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 MINDY1Q8N5J2 469 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 ATAD1Q8NBU5 361 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 OLIG1Q8TAK6 271 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 MDM1Q8TC05 714 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 TAS1R2Q8TE23 839 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 WHAMMQ8TF30 809 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 USP13Q92995 863 aaPredicted RBP12.02□□□□□ -0.49
CLN3-226ENST00000567160 SEPT5Q99719 369 aaPredicted RBP12.02□□□□□ -0.49
CLN3-226ENST00000567160 PI4K2AQ9BTU6 479 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 XPO4Q9C0E2 1151 aaKnown RBP12.02□□□□□ -0.49
CLN3-226ENST00000567160 ECT2Q9H8V3 914 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 TMEM74BQ9NUR3 256 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 DKK4Q9UBT3 224 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 SIX4Q9UIU6 781 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 PILRBQ9UKJ0 227 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 ITGA11Q9UKX5 1188 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 MMP17Q9ULZ9 603 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 AGAP1Q9UPQ3 857 aa12.02□□□□□ -0.49
CLN3-226ENST00000567160 CEP192Q8TEP8 1941 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 A0A1B0GTH6 734 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 TEX33O43247 280 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 SOAT2O75908 522 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 CST3P01034 146 aaPredicted RBP12.01□□□□□ -0.49
CLN3-226ENST00000567160 SYPP08247 313 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 SERPINF2P08697 491 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 FTH1P19P0C7X4 201 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 CYP3A5P20815 502 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 LRPAP1P30533 357 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 PTGER3P43115 390 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 IFNAR2P48551 515 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 MYL6P60660 151 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 RBP5P82980 135 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 CETN1Q12798 172 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 ZNF268Q14587 947 aaPredicted RBP12.01□□□□□ -0.49
CLN3-226ENST00000567160 CRY1Q16526 586 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 MGAT5BQ3V5L5 792 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 C2orf27AQ580R0 203 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 PEAR1Q5VY43 1037 aaPredicted RBP12.01□□□□□ -0.49
CLN3-226ENST00000567160 OVOS1Q6IE37 1185 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 DSTYKQ6XUX3 929 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 MAB21L3Q8N8X9 362 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 FBXL13Q8NEE6 735 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 USP33Q8TEY7 942 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 SEMA4DQ92854 862 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 PCMTD1Q96MG8 357 aaPredicted RBP12.01□□□□□ -0.49
CLN3-226ENST00000567160 LPIN3Q9BQK8 851 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 TRIM5Q9C035 493 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 INTS2Q9H0H0 1204 aaKnown RBP12.01□□□□□ -0.49
CLN3-226ENST00000567160 GRPEL1Q9HAV7 217 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 IL21Q9HBE4 155 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 RTN4Q9NQC3 1192 aaKnown RBP12.01□□□□□ -0.49
CLN3-226ENST00000567160 DUS2Q9NX74 493 aaKnown RBP12.01□□□□□ -0.49
CLN3-226ENST00000567160 GCNT4Q9P109 453 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 BCCIPQ9P287 314 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLN3-226ENST00000567160 CCL26Q9Y258 94 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 TIMM13Q9Y5L4 95 aaPredicted RBP12.01□□□□□ -0.49
CLN3-226ENST00000567160 MYH10P35580 1976 aa12.01□□□□□ -0.49
CLN3-226ENST00000567160 PTPRBP23467 1997 aa12□□□□□ -0.49
CLN3-226ENST00000567160 ANO9A1A5B4 782 aa12□□□□□ -0.49
CLN3-226ENST00000567160 PIRO00625 290 aa12□□□□□ -0.49
CLN3-226ENST00000567160 P4HA2O15460 535 aa12□□□□□ -0.49
CLN3-226ENST00000567160 CBFA2T2O43439 604 aa12□□□□□ -0.49
CLN3-226ENST00000567160 CD59P13987 128 aa12□□□□□ -0.49
CLN3-226ENST00000567160 SLC9A1P19634 815 aa12□□□□□ -0.49
CLN3-226ENST00000567160 TYMPP19971 482 aa12□□□□□ -0.49
CLN3-226ENST00000567160 LRMPQ12912 555 aa12□□□□□ -0.49
CLN3-226ENST00000567160 GSE1Q14687 1217 aa12□□□□□ -0.49
CLN3-226ENST00000567160 MTF1Q14872 753 aa12□□□□□ -0.49
CLN3-226ENST00000567160 SYCP1Q15431 976 aa12□□□□□ -0.49
CLN3-226ENST00000567160 ZNF699Q32M78 642 aa12□□□□□ -0.49
CLN3-226ENST00000567160 NAIF1Q69YI7 327 aaPredicted RBP12□□□□□ -0.49
CLN3-226ENST00000567160 SPOPLQ6IQ16 392 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms