RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 AGPAT1Q99943 283 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 TRMT61BQ9BVS5 477 aaKnown RBP20.51■□□□□ 0.87
CLN3-225ENST00000566824 KLF16Q9BXK1 252 aaPredicted RBP20.51■□□□□ 0.87
CLN3-225ENST00000566824 OBP2AQ9NY56 170 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 CLIC5Q9NZA1 410 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 AIPL1Q9NZN9 384 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 CAPN11Q9UMQ6 739 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 ITIH6Q6UXX5 1313 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 MYOFQ9NZM1 2061 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 A0A1W2PQJ5 194 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 ARNTLO00327 626 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 PFKLP17858 780 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 CASP14P31944 242 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 ACADSBP45954 432 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 ASIC2Q16515 512 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 SFMBT2Q5VUG0 894 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 TRIM68Q6AZZ1 485 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 FAM183BPQ6ZVS7 135 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 ZNF677Q86XU0 584 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 SLC30A5Q8TAD4 765 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 IRGQQ8WZA9 623 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 E2F7Q96AV8 911 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 NUP58Q9BVL2 599 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 SLC2A4RGQ9NR83 387 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 CFAP97Q9P2B7 532 aa20.5■□□□□ 0.87
CLN3-225ENST00000566824 FBXO21O94952 628 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 LTFP02788 710 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 IRF1P10914 325 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 ATP5C1P36542 298 aaKnown RBP20.49■□□□□ 0.87
CLN3-225ENST00000566824 PSEN1P49768 467 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 TNK2Q07912 1038 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 EFEMP1Q12805 493 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 BTBD8Q5XKL5 378 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 ZNF571Q7Z3V5 609 aaPredicted RBP20.49■□□□□ 0.87
CLN3-225ENST00000566824 MIB1Q86YT6 1006 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 UBALD2Q8IYN6 164 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 ARHGAP18Q8N392 663 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 TTC8Q8TAM2 541 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 DEPDC1BQ8WUY9 529 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 TRIM5Q9C035 493 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 LINC00597Q9H2U6 94 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 KIF9Q9HAQ2 790 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 WNT6Q9Y6F9 365 aa20.49■□□□□ 0.87
CLN3-225ENST00000566824 KRBA1A5PL33 1030 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 FAM86C2PA6NEL3 165 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 GREM1O60565 184 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 LSM8O95777 96 aaKnown RBP20.48■□□□□ 0.87
CLN3-225ENST00000566824 PDGFBP01127 241 aaPredicted RBP20.48■□□□□ 0.87
CLN3-225ENST00000566824 TPM3P06753 285 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 RALAP11233 206 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 UNGP13051 313 aaPredicted RBP20.48■□□□□ 0.87
CLN3-225ENST00000566824 ARSAP15289 507 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 TCF3P15923 654 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 ZBED6P86452 979 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 MTF1Q14872 753 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 CLEC16AQ2KHT3 1053 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 HGSNATQ68CP4 663 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 SPECC1LQ69YQ0 1117 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 OLFML1Q6UWY5 402 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 TRIM67Q6ZTA4 783 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 PHLDB2Q86SQ0 1253 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 DNAAF5Q86Y56 855 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 ZNF276Q8N554 614 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 FAM83CQ9BQN1 747 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 NACA2Q9H009 215 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 HAUS4Q9H6D7 363 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 BRD9Q9H8M2 597 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 C11orf16Q9NQ32 467 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 SFMBT1Q9UHJ3 866 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 RASAL2Q9UJF2 1139 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 CA14Q9ULX7 337 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 NAALADL1Q9UQQ1 740 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 CEP83Q9Y592 693 aa20.48■□□□□ 0.87
CLN3-225ENST00000566824 OTOL1A6NHN0 477 aaPredicted RBP20.47■□□□□ 0.87
CLN3-225ENST00000566824 ZNF263O14978 683 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 CHADO15335 359 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 GRAP2O75791 330 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 ALADP13716 330 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 PRKCIP41743 596 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 GABRB2P47870 512 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 ZNF75DP51815 510 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 PITX1P78337 314 aaPredicted RBP20.47■□□□□ 0.87
CLN3-225ENST00000566824 SYPL2Q5VXT5 272 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 OR6B2Q6IFH4 312 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 KLHDC10Q6PID8 442 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 ERICH1Q86X53 443 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 YAF2Q8IY57 180 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 HPS4Q9NQG7 708 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 ABCC13Q9NSE7 274 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 TAS2R14Q9NYV8 317 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 DNMT3LQ9UJW3 386 aa20.47■□□□□ 0.87
CLN3-225ENST00000566824 SHISA7A6NL88 538 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 MSI1O43347 362 aaKnown RBP20.46■□□□□ 0.87
CLN3-225ENST00000566824 HMBSP08397 361 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 PLEKP08567 350 aaPredicted RBP20.46■□□□□ 0.87
CLN3-225ENST00000566824 SIGLEC14Q08ET2 396 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 PTP4A2Q12974 167 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 MMS22LQ6ZRQ5 1243 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 RSRC2Q7L4I2 434 aaKnown RBP20.46■□□□□ 0.87
CLN3-225ENST00000566824 XYLT1Q86Y38 959 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms