RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 GPR174Q9BXC1 333 aa17.87■□□□□ 0.45
CDH3-205ENST00000566808 RBAKQ9NYW8 714 aaPredicted RBP17.87■□□□□ 0.45
CDH3-205ENST00000566808 EIF2S3P41091 472 aaKnown RBP17.86■□□□□ 0.45
CDH3-205ENST00000566808 TUBP50607 506 aa17.86■□□□□ 0.45
CDH3-205ENST00000566808 NEK4P51957 841 aa17.86■□□□□ 0.45
CDH3-205ENST00000566808 DHX8Q14562 1220 aaKnown RBP17.86■□□□□ 0.45
CDH3-205ENST00000566808 DCAF12L1Q5VU92 463 aa17.86■□□□□ 0.45
CDH3-205ENST00000566808 CCDC83Q8IWF9 413 aa17.86■□□□□ 0.45
CDH3-205ENST00000566808 FAM184AQ8NB25 1140 aa17.86■□□□□ 0.45
CDH3-205ENST00000566808 XPO6Q96QU8 1125 aaKnown RBP17.86■□□□□ 0.45
CDH3-205ENST00000566808 MTMR12Q9C0I1 747 aa17.86■□□□□ 0.45
CDH3-205ENST00000566808 ELOVL4Q9GZR5 314 aa17.86■□□□□ 0.45
CDH3-205ENST00000566808 IKZF4Q9H2S9 585 aa17.86■□□□□ 0.45
CDH3-205ENST00000566808 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.86■□□□□ 0.45
CDH3-205ENST00000566808 R3HCC1Q9Y3T6 440 aaKnown RBP17.86■□□□□ 0.45
CDH3-205ENST00000566808 TEX51A0A1B0GUA7 166 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 NEDD8-MDP1E9PL57 170 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 TULP1O00294 542 aaPredicted RBP17.85■□□□□ 0.45
CDH3-205ENST00000566808 PLK4O00444 970 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 RRP8O43159 456 aaKnown RBP17.85■□□□□ 0.45
CDH3-205ENST00000566808 TMEM191BP0C7N4 346 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 WARSP23381 471 aaKnown RBP17.85■□□□□ 0.45
CDH3-205ENST00000566808 AFF3P51826 1226 aaKnown RBP17.85■□□□□ 0.45
CDH3-205ENST00000566808 INAVAQ3KP66 663 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 FUT11Q495W5 492 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 MDH1BQ5I0G3 518 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 HECTD3Q5T447 861 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 SCARA3Q6AZY7 606 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 TMPRSS12Q86WS5 348 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 CALML4Q96GE6 196 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 FAM84AQ96KN4 292 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 AK8Q96MA6 479 aa17.85■□□□□ 0.45
CDH3-205ENST00000566808 NUMA1Q14980 2115 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 METTL12A8MUP2 240 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 PRRT4C9JH25 899 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 PPP1R37O75864 691 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 RTN3O95197 1032 aaPredicted RBP17.84■□□□□ 0.45
CDH3-205ENST00000566808 TYRP14679 529 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 YWHAQP27348 245 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 OXTRP30559 389 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 HNF1BP35680 557 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 ZNF132P52740 706 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 IFRD2Q12894 506 aaPredicted RBP17.84■□□□□ 0.45
CDH3-205ENST00000566808 CCDC157Q569K6 752 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 C6orf118Q5T5N4 469 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 ARL6IP4Q66PJ3 421 aaKnown RBP17.84■□□□□ 0.45
CDH3-205ENST00000566808 DHRS13Q6UX07 377 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 C1orf216Q8TAB5 229 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 BAP1Q92560 729 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 FBXO32Q969P5 355 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 SAAL1Q96ER3 474 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 HPDLQ96IR7 371 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 BBS2Q9BXC9 721 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 PCED1AQ9H1Q7 454 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 ITM2CQ9NQX7 267 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 BLOC1S4Q9NUP1 217 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 TMEM30AQ9NV96 361 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 MARK1Q9P0L2 795 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 EIF2B4Q9UI10 523 aaKnown RBP17.84■□□□□ 0.45
CDH3-205ENST00000566808 MYLKQ15746 1914 aa17.84■□□□□ 0.45
CDH3-205ENST00000566808 A0A1B0GVT2 93 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 KCNJ18B7U540 433 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 TLX3O43711 291 aaPredicted RBP17.83■□□□□ 0.44
CDH3-205ENST00000566808 LDHAP00338 332 aaKnown RBP17.83■□□□□ 0.44
CDH3-205ENST00000566808 IGLV3-19P01714 112 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 PDGFRBP09619 1106 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 DDIT3P35638 169 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 CCT8P50990 548 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 TPMTP51580 245 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 CACNA2D1P54289 1103 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 CFHR1Q03591 330 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 MCM6Q14566 821 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 RILPL1Q5EBL4 403 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 SNX30Q5VWJ9 437 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 HS2ST1Q7LGA3 356 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 GPR155Q7Z3F1 870 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 NUP93Q8N1F7 819 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 RAD54LQ92698 747 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 ANKRD36BP1Q96IX9 119 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 MKRN2Q9H000 416 aaKnown RBP17.83■□□□□ 0.44
CDH3-205ENST00000566808 WDR35Q9P2L0 1181 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 FTSJ1Q9UET6 329 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 EXOC7Q9UPT5 735 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 STON1Q9Y6Q2 735 aa17.83■□□□□ 0.44
CDH3-205ENST00000566808 NPC1O15118 1278 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 PCDHGA12O60330 932 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 IRF1P10914 325 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 DGKGP49619 791 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 ZNF720Q7Z2F6 126 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 SFR1Q86XK3 245 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 SNIP1Q8TAD8 396 aaKnown RBP17.82■□□□□ 0.44
CDH3-205ENST00000566808 IGSF8Q969P0 613 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 ZNF518BQ9C0D4 1074 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 NACA2Q9H009 215 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 CCSER2Q9H7U1 834 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 LIMCH1Q9UPQ0 1083 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 PIEZO2Q9H5I5 2752 aa17.82■□□□□ 0.44
CDH3-205ENST00000566808 WASH3PC4AMC7 463 aa17.81■□□□□ 0.44
CDH3-205ENST00000566808 GARTP22102 1010 aa17.81■□□□□ 0.44
CDH3-205ENST00000566808 UBA7P41226 1012 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms