RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PDGFRAP16234 1089 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 TYMPP19971 482 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 TNFRSF8P28908 595 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 PCK1P35558 622 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 MTHFRP42898 656 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 PLA2G4AP47712 749 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 MARCKSL1P49006 195 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 RPL34P49207 117 aaKnown RBP9.35□□□□□ -0.91
VPS39-207ENST00000563692 GLUD2P49448 558 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 RGS7P49802 495 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 AFF1P51825 1210 aaKnown RBP9.35□□□□□ -0.91
VPS39-207ENST00000563692 SLC7A5Q01650 507 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 DR1Q01658 176 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 GUCY2DQ02846 1103 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 DSC1Q08554 894 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 GPS2Q13227 327 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 CUL1Q13616 776 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 KCNC3Q14003 757 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 ATAT1Q5SQI0 421 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 SYCE2Q6PIF2 218 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 FAM183BPQ6ZVS7 135 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 ARCQ7LC44 396 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 POLNQ7Z5Q5 900 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 OSTM1Q86WC4 334 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 RNF135Q8IUD6 432 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 SCUBE3Q8IX30 993 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 BCL7CQ8WUZ0 217 aaPredicted RBP9.35□□□□□ -0.91
VPS39-207ENST00000563692 SUSD6Q92537 303 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 SYT15Q9BQS2 421 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 LRFN3Q9BTN0 628 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 HERC2P3Q9BVR0 1158 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 ADAM7Q9H2U9 754 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 SFXN1Q9H9B4 322 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 LRRC4Q9HBW1 653 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 EPB41L5Q9HCM4 733 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 NME7Q9Y5B8 376 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 PLXNA4Q9HCM2 1894 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 PRR33A8MZF0 331 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 DPYSL4O14531 572 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 RAD51CO43502 376 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 B4GALT3O60512 393 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 FBXO21O94952 628 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 CNPP09543 421 aaKnown RBP9.34□□□□□ -0.91
VPS39-207ENST00000563692 LCP1P13796 627 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 NPR3P17342 541 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 ACAT1P24752 427 aaKnown RBP9.34□□□□□ -0.91
VPS39-207ENST00000563692 SDC4P31431 198 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 GBP1P32455 592 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 FNTAP49354 379 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 TAS2R40P59535 323 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 TSPY1Q01534 308 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 CREMQ03060 361 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 LMNB2Q03252 620 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 BOLA3Q53S33 107 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 MDH1BQ5I0G3 518 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 BEND6Q5SZJ8 279 aaPredicted RBP9.34□□□□□ -0.91
VPS39-207ENST00000563692 RARS2Q5T160 578 aaKnown RBP9.34□□□□□ -0.91
VPS39-207ENST00000563692 FUT10Q6P4F1 479 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 ADAT2Q7Z6V5 191 aaKnown RBP9.34□□□□□ -0.91
VPS39-207ENST00000563692 MAP7D3Q8IWC1 876 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 CCDC105Q8IYK2 499 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 KCTD6Q8NC69 237 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 JOSD2Q8TAC2 188 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 MYCBPAPQ8TBZ2 947 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 GRK7Q8WTQ7 553 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 HDAC7Q8WUI4 952 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 RXFP2Q8WXD0 754 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 IFT81Q8WYA0 676 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 KCTD13Q8WZ19 329 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 KHSRPQ92945 711 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS39-207ENST00000563692 RNF25Q96BH1 459 aaPredicted RBP9.34□□□□□ -0.91
VPS39-207ENST00000563692 SUSD3Q96L08 255 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 KLHL5Q96PQ7 755 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 MAK16Q9BXY0 300 aaKnown RBP9.34□□□□□ -0.91
VPS39-207ENST00000563692 OSBPL8Q9BZF1 889 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 DDX47Q9H0S4 455 aaKnown RBP9.34□□□□□ -0.91
VPS39-207ENST00000563692 S1PR5Q9H228 398 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 LRRC19Q9H756 370 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 GDF3Q9NR23 364 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS39-207ENST00000563692 FAM114A2Q9NRY5 505 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 MARCH5Q9NX47 278 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 TJP2Q9UDY2 1190 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 PCYOX1Q9UHG3 505 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 AMACRQ9UHK6 382 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 DMGDHQ9UI17 866 aaKnown RBP9.34□□□□□ -0.91
VPS39-207ENST00000563692 MUTYHQ9UIF7 546 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 PCDHB8Q9UN66 801 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 EFR3BQ9Y2G0 817 aa9.34□□□□□ -0.91
VPS39-207ENST00000563692 SF3B1O75533 1304 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS39-207ENST00000563692 C2CD4BA6NLJ0 364 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 LOC730098B7Z3J9 87 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 TMEM189-UBE2V1I3L0A0 370 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 PIK3R2O00459 728 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 PAPSS1O43252 624 aaPredicted RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 PRPSAP2O60256 369 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 ATP2C2O75185 946 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 LRCH4O75427 683 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 ZMYND10O75800 440 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 AP1G2O75843 785 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms