RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SYPL2Q5VXT5 272 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 BSPRYQ5W0U4 402 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 XYLT1Q86Y38 959 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 RNF135Q8IUD6 432 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 GJD3Q8N144 294 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 SIX6OS1Q8N1H7 587 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 SCML4Q8N228 414 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 TMEM35BQ8NCS4 154 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 OVCA2Q8WZ82 227 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 SMARCD2Q92925 531 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 ASIC4Q96FT7 647 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 ZFYVE19Q96K21 471 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 GCNAQ96QF7 691 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 C11orf70Q9BRQ4 267 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 ANP32EQ9BTT0 268 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 RAB6CQ9H0N0 254 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 PDCL3Q9H2J4 239 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 KCNK12Q9HB15 430 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 CYLDQ9NQC7 956 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 CNGB3Q9NQW8 809 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 TLR8Q9NR97 1041 aaKnown RBP10.27□□□□□ -0.77
CLK3-208ENST00000562626 GKN1Q9NS71 199 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 ABHD10Q9NUJ1 306 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 SEPT11Q9NVA2 429 aaKnown RBP10.27□□□□□ -0.77
CLK3-208ENST00000562626 SMPD4Q9NXE4 827 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 CALCOCO1Q9P1Z2 691 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 NR2E1Q9Y466 385 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 A0A087X0T9 212 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 TRAV19A0A0A6YYK7 116 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 TCRBV5S1A1TA0A578 114 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 HEPACAM2A8MVW5 462 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 ATMINO43313 823 aaPredicted RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 MSI1O43347 362 aaKnown RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 GREM1O60565 184 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 TLR5O60602 858 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 LSM8O95777 96 aaKnown RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 LTFP02788 710 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 CKMP06732 381 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 FAM228BP0C875 321 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 MBL2P11226 248 aaPredicted RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 HDCP19113 662 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 TFE3P19532 575 aaPredicted RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 TNFAIP3P21580 790 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 MMP8P22894 467 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 EIF4A3P38919 411 aaKnown RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 GABRB2P47870 512 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 SLC8A3P57103 927 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 SLC7A9P82251 487 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 EFEMP1Q12805 493 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 USP4Q13107 963 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 ZNF77Q15935 545 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 ASTE1Q2TB18 679 aaPredicted RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 ARHGAP15Q53QZ3 475 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 HECTD3Q5T447 861 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 OR6B2Q6IFH4 312 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 MON1BQ7L1V2 547 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 SPC24Q8NBT2 197 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 PDZD8Q8NEN9 1154 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 SYN2Q92777 582 aaPredicted RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 ACSF2Q96CM8 615 aaPredicted RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 P2RY11Q96G91 374 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 UHRF1Q96T88 793 aaPredicted RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 LRFN3Q9BTN0 628 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 KLF16Q9BXK1 252 aaPredicted RBP10.26□□□□□ -0.77
CLK3-208ENST00000562626 GRPEL1Q9HAV7 217 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 TRPV4Q9HBA0 871 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 CLIC5Q9NZA1 410 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 EHD2Q9NZN4 543 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 SFMBT1Q9UHJ3 866 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 MUTYHQ9UIF7 546 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 NAALADL1Q9UQQ1 740 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 CPQQ9Y646 472 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 NUP205Q92621 2012 aa10.26□□□□□ -0.77
CLK3-208ENST00000562626 AKR1B15C9JRZ8 316 aaPredicted RBP10.25□□□□□ -0.77
CLK3-208ENST00000562626 GOLGA8SH3BPF8 625 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 LEFTY2O00292 366 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 ZNF263O14978 683 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 ECI2O75521 394 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 SERPING1P05155 500 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 IRF1P10914 325 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 DDX6P26196 483 aaKnown RBP eCLIP10.25□□□□□ -0.77
CLK3-208ENST00000562626 WEE1P30291 646 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 ACADSBP45954 432 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 PPP3CCP48454 512 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 TUBP50607 506 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 SLC6A3Q01959 620 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 TRIM14Q14142 442 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 TDRD12Q587J7 1177 aaKnown RBP10.25□□□□□ -0.77
CLK3-208ENST00000562626 C10orf120Q5SQS8 335 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 TRIM72Q6ZMU5 477 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 ERICH1Q86X53 443 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 PHF13Q86YI8 300 aaPredicted RBP10.25□□□□□ -0.77
CLK3-208ENST00000562626 SLC44A3Q8N4M1 653 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 EMC1Q8N766 993 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 TTC16Q8NEE8 873 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 OR8K1Q8NGG5 319 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 JOSD2Q8TAC2 188 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 ADAM32Q8TC27 787 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 SH3RF2Q8TEC5 729 aa10.25□□□□□ -0.77
CLK3-208ENST00000562626 IRGQQ8WZA9 623 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms