RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 LRFN2Q9ULH4 789 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 SNX24Q9Y343 169 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 PCDHB7Q9Y5E2 793 aa7.83□□□□□ -1.16
VPS39-204ENST00000561818 C3orf70A6NLC5 250 aaPredicted RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 ERI2A8K979 691 aaKnown RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 SPTLC1O15269 473 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 RGS16O15492 202 aaPredicted RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 FGF10O15520 208 aaPredicted RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 PSMD3O43242 534 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 RIPK2O43353 540 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 AOC2O75106 756 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 RTN3O95197 1032 aaPredicted RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 SYF2O95926 243 aaKnown RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 LTFP02788 710 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 PDGFRBP09619 1106 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 RBP3P10745 1247 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 NR1D1P20393 614 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 FDFT1P37268 417 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 CDK7P50613 346 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ARSEP51690 589 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 CLCNKBP51801 687 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 TKTL1P51854 596 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 OTUD4Q01804 1114 aaKnown RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 OGDHQ02218 1023 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 DEUP1Q05D60 604 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 SOX4Q06945 474 aaPredicted RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 ADIGQ0VDE8 80 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 DPYSL3Q14195 570 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 HIF1AQ16665 826 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 MDH1BQ5I0G3 518 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ZNF618Q5T7W0 954 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 KAZNQ674X7 775 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 PM20D1Q6GTS8 502 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 HIBCHQ6NVY1 386 aaPredicted RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 SCYL2Q6P3W7 929 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ZNF449Q6P9G9 518 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 RHBDF2Q6PJF5 856 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 CLEC20AQ6ZU45 233 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ANKS3Q6ZW76 656 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ANKRD33Q7Z3H0 272 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ANKS1BQ7Z6G8 1248 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 TDRPQ86YL5 185 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 VPS52Q8N1B4 723 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 LRRC43Q8N309 656 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ATP11CQ8NB49 1132 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 GSTCDQ8NEC7 633 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ACTL9Q8TC94 416 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 SPPL2BQ8TCT7 592 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 C1orf54Q8WWF1 131 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 RAPGEF5Q92565 580 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 HSPH1Q92598 858 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ZFP42Q96MM3 310 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 SERPINB11Q96P15 392 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 NPY6RQ99463 290 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 HEMGNQ9BXL5 484 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 TRIM31Q9BZY9 425 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 TRIM7Q9C029 511 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 AGO3Q9H9G7 860 aaKnown RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 TMBIM4Q9HC24 238 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 XAB2Q9HCS7 855 aaKnown RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 PAK6Q9NQU5 681 aaPredicted RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 EIF2B3Q9NR50 452 aaKnown RBP7.82□□□□□ -1.16
VPS39-204ENST00000561818 CHST7Q9NS84 486 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 ABCC13Q9NSE7 274 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 SLC12A6Q9UHW9 1150 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 SLC24A2Q9UI40 661 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 OGDHLQ9ULD0 1010 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 AP4E1Q9UPM8 1137 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 FAN1Q9Y2M0 1017 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 NEU2Q9Y3R4 380 aa7.82□□□□□ -1.16
VPS39-204ENST00000561818 AGPSO00116 658 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 RASGRF2O14827 1237 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 POLR3GO15318 223 aaPredicted RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 OPHN1O60890 802 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 SHOX2O60902 331 aaPredicted RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 TADA2AO75478 443 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 ALDH2P05091 517 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 MLNP12872 115 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 CCDC130P13994 396 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 GBP2P32456 591 aaPredicted RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 STX2P32856 288 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 FLT3P36888 993 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 MAGEA6P43360 314 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 RGS7P49802 495 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 SULT1E1P49888 294 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 ITGA8P53708 1063 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 HDAC4P56524 1084 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 DAOAP59103 153 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 RPL10AP62906 217 aaKnown RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 NRG1Q02297 640 aaPredicted RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 ZNF844Q08AG5 666 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 GPS1Q13098 491 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 NAB1Q13506 487 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 C2CD6Q53TS8 623 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 PLEKHG4Q58EX7 1191 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 SLC45A4Q5BKX6 768 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 ANKRD20A8PQ5CZ79 823 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 LGSNQ5TDP6 509 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 HEATR6Q6AI08 1181 aaKnown RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 ITPRIPL1Q6GPH6 555 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms