RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RNF43Q68DV7 783 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 TMEM25Q86YD3 366 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 ETFBKMTQ8IXQ9 262 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 CRYBG2Q8N1P7 616 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 TMEM174Q8WUU8 243 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 DDX1Q92499 740 aaKnown RBP12.31□□□□□ -0.44
USP3-220ENST00000561381 JAKMIP2Q96AA8 810 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 EDEM2Q9BV94 578 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 APOBEC3GQ9HC16 384 aaKnown RBP12.31□□□□□ -0.44
USP3-220ENST00000561381 CSNK1G1Q9HCP0 422 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 OSER1Q9NX31 292 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 MAPK8IP1Q9UQF2 711 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 FRMD4BQ9Y2L6 1034 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 ZDHHC9Q9Y397 364 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 GON4LQ3T8J9 2241 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 PATE3B3GLJ2 98 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 HHLA1C9JL84 531 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 CYP26A1O43174 497 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 HOXC11O43248 304 aaPredicted RBP12.3□□□□□ -0.44
USP3-220ENST00000561381 GREM1O60565 184 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 TLR5O60602 858 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 TULP3O75386 442 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 P4HA1P13674 534 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 GCLMP48507 274 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 VAMP7P51809 220 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 NDUFA8P51970 172 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 GAD2Q05329 585 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 PPP3CAQ08209 521 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 ANO4Q32M45 955 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 UNC93AQ86WB7 457 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 OLIG1Q8TAK6 271 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 TAS1R2Q8TE23 839 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 HMGB4Q8WW32 186 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 OTUB2Q96DC9 234 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 SPATA32Q96LK8 384 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 LSM14BQ9BX40 385 aaKnown RBP12.3□□□□□ -0.44
USP3-220ENST00000561381 NACA2Q9H009 215 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 SPHK2Q9NRA0 654 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 COMMD8Q9NX08 183 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 HCN2Q9UL51 889 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 TRAF3IP3Q9Y228 551 aa12.3□□□□□ -0.44
USP3-220ENST00000561381 TCRBV21S2A2A0A5A6 115 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 LNP1A1A4G5 178 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 TBC1D3BA6NDS4 549 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 C4orf47A7E2U8 309 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.29□□□□□ -0.44
USP3-220ENST00000561381 IKBKBO14920 756 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 MDM4O15151 490 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 CALUO43852 315 aaPredicted RBP12.29□□□□□ -0.44
USP3-220ENST00000561381 FAM200BP0CF97 657 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 NR2F2P24468 414 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 PMLP29590 882 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 P2RY2P41231 377 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 SYKP43405 635 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 TNFRSF4P43489 277 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 DHPSP49366 369 aaPredicted RBP12.29□□□□□ -0.44
USP3-220ENST00000561381 EOGTQ5NDL2 527 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 CLEC20AQ6ZU45 233 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 CYP2U1Q7Z449 544 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 MIB1Q86YT6 1006 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 WHAMMQ8TF30 809 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 TAF4BQ92750 862 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 ERLEC1Q96DZ1 483 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 KLF16Q9BXK1 252 aaPredicted RBP12.29□□□□□ -0.44
USP3-220ENST00000561381 FBXO44Q9H4M3 255 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 MMRN2Q9H8L6 949 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 NMUR1Q9HB89 426 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 TLR8Q9NR97 1041 aaKnown RBP12.29□□□□□ -0.44
USP3-220ENST00000561381 USP25Q9UHP3 1055 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 MBD1Q9UIS9 605 aaPredicted RBP12.29□□□□□ -0.44
USP3-220ENST00000561381 NUDT5Q9UKK9 219 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 EPG5Q9HCE0 2579 aa12.29□□□□□ -0.44
USP3-220ENST00000561381 MAP1BP46821 2468 aaKnown RBP12.29□□□□□ -0.44
USP3-220ENST00000561381 LAMA1P25391 3075 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 A0A1W2PQH9 124 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 GIPC1O14908 333 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 ALDH1A2O94788 518 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 RHOBTB3O94955 611 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 KCNK5O95279 499 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 MYL1P05976 194 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 CD58P19256 250 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 ACO1P21399 889 aaKnown RBP12.28□□□□□ -0.44
USP3-220ENST00000561381 WASP42768 502 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 PTGER3P43115 390 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 KRT85P78386 507 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 IRX4P78413 519 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 INCA1Q0VD86 236 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 DPYDQ12882 1025 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 MAP7D1Q3KQU3 841 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 HSF5Q4G112 596 aaPredicted RBP12.28□□□□□ -0.44
USP3-220ENST00000561381 C10orf76Q5T2E6 689 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 BTBD8Q5XKL5 378 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 PSAPL1Q6NUJ1 521 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 TPGS1Q6ZTW0 290 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 ARMCX6Q7L4S7 300 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 C11orf74Q86VG3 221 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 TMEFF1Q8IYR6 380 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 ZNF513Q8N8E2 541 aaPredicted RBP12.28□□□□□ -0.44
USP3-220ENST00000561381 TERB1Q8NA31 727 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms