RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 EDEM1Q92611 657 aa22.83■■□□□ 1.25
SNX1-210ENST00000560260 KHSRPQ92945 711 aaKnown RBP eCLIP22.83■■□□□ 1.251e-6■□□□□ 9.7
SNX1-210ENST00000560260 USP13Q92995 863 aaPredicted RBP22.83■■□□□ 1.25
SNX1-210ENST00000560260 ZFRQ96KR1 1074 aaKnown RBP22.83■■□□□ 1.25
SNX1-210ENST00000560260 LRRC3BQ96PB8 259 aa22.83■■□□□ 1.25
SNX1-210ENST00000560260 CHP1Q99653 195 aa22.83■■□□□ 1.25
SNX1-210ENST00000560260 PLA2G2FQ9BZM2 168 aa22.83■■□□□ 1.25
SNX1-210ENST00000560260 SYNCQ9H7C4 482 aa22.83■■□□□ 1.25
SNX1-210ENST00000560260 TRPV4Q9HBA0 871 aa22.83■■□□□ 1.25
SNX1-210ENST00000560260 BZW2Q9Y6E2 419 aaKnown RBP22.83■■□□□ 1.25
SNX1-210ENST00000560260 NUMBLQ9Y6R0 609 aa22.83■■□□□ 1.25
SNX1-210ENST00000560260 LTFP02788 710 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 CKMP06732 381 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 HDCP19113 662 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 WEE1P30291 646 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 EIF4A3P38919 411 aaKnown RBP22.82■■□□□ 1.24
SNX1-210ENST00000560260 NSFP46459 744 aaKnown RBP22.82■■□□□ 1.24
SNX1-210ENST00000560260 PSEN1P49768 467 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 ACAD10Q6JQN1 1059 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.82■■□□□ 1.24
SNX1-210ENST00000560260 PHLDB2Q86SQ0 1253 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 DRC7Q8IY82 874 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 ARHGAP18Q8N392 663 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 PLCD3Q8N3E9 789 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 C18orf8Q96DM3 657 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 KXD1Q9BQD3 176 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 ZMYM5Q9UJ78 669 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 NENFQ9UMX5 172 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 KIF26AQ9ULI4 1882 aaPredicted RBP22.82■■□□□ 1.24
SNX1-210ENST00000560260 A0A087X0T9 212 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 TMCO5BA8MYB1 307 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 FAM228BP0C875 321 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 PFKLP17858 780 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 AVPR1AP37288 418 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 SLC7A9P82251 487 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 ASTE1Q2TB18 679 aaPredicted RBP22.82■■□□□ 1.24
SNX1-210ENST00000560260 BTBD8Q5XKL5 378 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 FAM149B1Q96BN6 582 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 SMPD4Q9NXE4 827 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 ADAMTS1Q9UHI8 967 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 ARHGAP26Q9UNA1 814 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 CPQQ9Y646 472 aa22.82■■□□□ 1.24
SNX1-210ENST00000560260 SART1O43290 800 aaKnown RBP22.81■■□□□ 1.24
SNX1-210ENST00000560260 GRAP2O75791 330 aa22.81■■□□□ 1.24
SNX1-210ENST00000560260 SLC6A3Q01959 620 aa22.81■■□□□ 1.24
SNX1-210ENST00000560260 USP4Q13107 963 aa22.81■■□□□ 1.24
SNX1-210ENST00000560260 MAPK8IP2Q13387 824 aaPredicted RBP22.81■■□□□ 1.24
SNX1-210ENST00000560260 VITQ6UXI7 678 aa22.81■■□□□ 1.24
SNX1-210ENST00000560260 SLC26A9Q7LBE3 791 aa22.81■■□□□ 1.24
SNX1-210ENST00000560260 ZNF276Q8N554 614 aa22.81■■□□□ 1.24
SNX1-210ENST00000560260 WBP2Q969T9 261 aa22.81■■□□□ 1.24
SNX1-210ENST00000560260 KCNK12Q9HB15 430 aa22.81■■□□□ 1.24
SNX1-210ENST00000560260 ADAM22Q9P0K1 906 aa22.81■■□□□ 1.24
SNX1-210ENST00000560260 HEPACAM2A8MVW5 462 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 GOLGA8SH3BPF8 625 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 GJB6O95452 261 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 MBL2P11226 248 aaPredicted RBP22.8■■□□□ 1.24
SNX1-210ENST00000560260 RALAP11233 206 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 ZNF268Q14587 947 aaPredicted RBP22.8■■□□□ 1.24
SNX1-210ENST00000560260 ZNF77Q15935 545 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 C10orf120Q5SQS8 335 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 KLHDC10Q6PID8 442 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 MCOLN2Q8IZK6 566 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 MSANTD4Q8NCY6 345 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 ELSPBP1Q96BH3 223 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 SLC2A13Q96QE2 648 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.8■■□□□ 1.24
SNX1-210ENST00000560260 ZFP14Q9HCL3 533 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 ABCC13Q9NSE7 274 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 TDP1Q9NUW8 608 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 ZNHIT6Q9NWK9 470 aaKnown RBP22.8■■□□□ 1.24
SNX1-210ENST00000560260 ASNSD1Q9NWL6 643 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 RASAL2Q9UJF2 1139 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 NAALADL1Q9UQQ1 740 aa22.8■■□□□ 1.24
SNX1-210ENST00000560260 A0A0C4DFX4 3053 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 SSU72P8A0A1W2PR75 194 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 TCRBV5S1A1TA0A578 114 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 ECI2O75521 394 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 FECHP22830 423 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 GSCP56915 257 aaPredicted RBP22.79■■□□□ 1.24
SNX1-210ENST00000560260 PITX1P78337 314 aaPredicted RBP22.79■■□□□ 1.24
SNX1-210ENST00000560260 CDK17Q00537 523 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 C1QBPQ07021 282 aaKnown RBP22.79■■□□□ 1.24
SNX1-210ENST00000560260 EFEMP1Q12805 493 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 FAM102AQ5T9C2 384 aaPredicted RBP22.79■■□□□ 1.24
SNX1-210ENST00000560260 SYPL2Q5VXT5 272 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 TRNP1Q6NT89 227 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 MSANTD2Q6P1R3 559 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 TOGARAM2Q6ZUX3 1019 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 MTSS1LQ765P7 747 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 RNF135Q8IUD6 432 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 ZDHHC17Q8IUH5 632 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 GJD3Q8N144 294 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 SH3RF2Q8TEC5 729 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 UHRF1Q96T88 793 aaPredicted RBP22.79■■□□□ 1.24
SNX1-210ENST00000560260 SMOC2Q9H3U7 446 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 GKN1Q9NS71 199 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 IMPACTQ9P2X3 320 aa22.79■■□□□ 1.24
SNX1-210ENST00000560260 ATMINO43313 823 aaPredicted RBP22.78■■□□□ 1.24
SNX1-210ENST00000560260 DAB1O75553 588 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms