RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CNGA2Q16280 664 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 C10orf120Q5SQS8 335 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 PPP1R26Q5T8A7 1209 aaPredicted RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 TRMT11Q7Z4G4 463 aaKnown RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 SPEM1Q8N4L4 309 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 ZNF557Q8N988 423 aaPredicted RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 SLC4A11Q8NBS3 891 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 RBBP8NLQ8NC74 664 aaPredicted RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 ST13P5Q8NFI4 369 aaPredicted RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 IRGQQ8WZA9 623 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 CD101Q93033 1021 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 TATDN2Q93075 761 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 NKD2Q969F2 451 aaPredicted RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 XPO6Q96QU8 1125 aaKnown RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 SMOQ99835 787 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 SMG9Q9H0W8 520 aaKnown RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 CHRDQ9H2X0 955 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 EBF3Q9H4W6 596 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 UBE2TQ9NPD8 197 aaPredicted RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 CYLDQ9NQC7 956 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 CNGB3Q9NQW8 809 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 GMIPQ9P107 970 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 CFAP97Q9P2B7 532 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 WDR35Q9P2L0 1181 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 APEX2Q9UBZ4 518 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 HMGXB4Q9UGU5 601 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 CHORDC1Q9UHD1 332 aaPredicted RBP9.11□□□□□ -0.95
USP3-208ENST00000558285 TSPAN16Q9UKR8 245 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 PCDHGA2Q9Y5H1 932 aa9.11□□□□□ -0.95
USP3-208ENST00000558285 C2orf78A6NCI8 922 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 ARNTLO00327 626 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 TRDMT1O14717 391 aaKnown RBP9.1□□□□□ -0.95
USP3-208ENST00000558285 TNFRSF10BO14763 440 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 TADA3O75528 432 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 ZBED1O96006 694 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 ZDHHC11BP0C7U3 371 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 TARSP26639 723 aaKnown RBP9.1□□□□□ -0.95
USP3-208ENST00000558285 CNR2P34972 360 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 CHKAP35790 457 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 USP8P40818 1118 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 CCDC142Q17RM4 750 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 HSF5Q4G112 596 aaPredicted RBP9.1□□□□□ -0.95
USP3-208ENST00000558285 VWA3BQ502W6 1294 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 SCARA3Q6AZY7 606 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 LCLAT1Q6UWP7 414 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 PAQR9Q6ZVX9 377 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 PIGZQ86VD9 579 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 CCDC117Q8IWD4 279 aaPredicted RBP9.1□□□□□ -0.95
USP3-208ENST00000558285 PRSS33Q8NF86 280 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 ENOX1Q8TC92 643 aaKnown RBP9.1□□□□□ -0.95
USP3-208ENST00000558285 WHAMMQ8TF30 809 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 KCTD13Q8WZ19 329 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 HSFY1Q96LI6 401 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 TWNKQ96RR1 684 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 CYP2S1Q96SQ9 504 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 DDX50Q9BQ39 737 aaKnown RBP9.1□□□□□ -0.95
USP3-208ENST00000558285 TUBGCP2Q9BSJ2 902 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 NDST4Q9H3R1 872 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 GEMIN8Q9NWZ8 242 aaKnown RBP9.1□□□□□ -0.95
USP3-208ENST00000558285 SMPD4Q9NXE4 827 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 GTSE1Q9NYZ3 720 aa9.1□□□□□ -0.95
USP3-208ENST00000558285 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.1□□□□□ -0.95
USP3-208ENST00000558285 NUP210Q8TEM1 1887 aaPredicted RBP9.1□□□□□ -0.95
USP3-208ENST00000558285 ZDBF2Q9HCK1 2354 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 TYW5A2RUC4 315 aaKnown RBP9.09□□□□□ -0.95
USP3-208ENST00000558285 SMTNL1A8MU46 457 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 KCNJ18B7U540 433 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 H0Y858 1186 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 M0QYV0 167 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 CLGNO14967 610 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 COCHO43405 550 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 APODP05090 189 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 CCDC172P0C7W6 258 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 RARGP13631 454 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 HARS2P49590 506 aaKnown RBP9.09□□□□□ -0.95
USP3-208ENST00000558285 TKTL1P51854 596 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 KCNJ12Q14500 433 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 DPCR1Q3MIW9 517 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 PPP1R15BQ5SWA1 713 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 CAVIN1Q6NZI2 390 aaKnown RBP9.09□□□□□ -0.95
USP3-208ENST00000558285 TRIM65Q6PJ69 517 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 RRAGAQ7L523 313 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 SCML4Q8N228 414 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 SCAMP5Q8TAC9 235 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 RSPRY1Q96DX4 576 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 ZFYVE19Q96K21 471 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 MED15Q96RN5 788 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 ABCC13Q9NSE7 274 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 SLC8A2Q9UPR5 921 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 CCL26Q9Y258 94 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 NME7Q9Y5B8 376 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 WNT6Q9Y6F9 365 aa9.09□□□□□ -0.95
USP3-208ENST00000558285 NOTCH4Q99466 2003 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 O00370 1275 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 PI15O43692 258 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 ALDH1A2O94788 518 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 CAVIN2O95810 425 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 ADH5P11766 374 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 CD72P21854 359 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 GNA15P30679 374 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms