RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 PCSK1P29120 753 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 GRIK1P39086 918 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 WNT7BP56706 349 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 TFAMQ00059 246 aaKnown RBP9.91□□□□□ -0.82
SYNE2-224ENST00000557024 GAD2Q05329 585 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 DHX8Q14562 1220 aaKnown RBP9.91□□□□□ -0.82
SYNE2-224ENST00000557024 HYIQ5T013 277 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 BTBD8Q5XKL5 378 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 KIAA1324Q6UXG2 1013 aaKnown RBP9.91□□□□□ -0.82
SYNE2-224ENST00000557024 CRELD2Q6UXH1 353 aaPredicted RBP9.91□□□□□ -0.82
SYNE2-224ENST00000557024 C4orf50Q6ZRC1 276 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 DENND5BQ6ZUT9 1274 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 GPBP1Q86WP2 473 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 ETFBKMTQ8IXQ9 262 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 CHPFQ8IZ52 775 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 GALNT15Q8N3T1 639 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 ZNF843Q8N446 348 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 TERB1Q8NA31 727 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 BAHD1Q8TBE0 780 aaPredicted RBP9.91□□□□□ -0.82
SYNE2-224ENST00000557024 RHBDD1Q8TEB9 315 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 IPO4Q8TEX9 1081 aaKnown RBP9.91□□□□□ -0.82
SYNE2-224ENST00000557024 FOXJ1Q92949 421 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 MYLPFQ96A32 169 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 CDK5RAP3Q96JB5 506 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 USP28Q96RU2 1077 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 CDC6Q99741 560 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 ZHX3Q9H4I2 956 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 GDPD2Q9HCC8 539 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 CD248Q9HCU0 757 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 TM7SF3Q9NS93 570 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 MAGEC2Q9UBF1 373 aaPredicted RBP9.91□□□□□ -0.82
SYNE2-224ENST00000557024 ODF2LQ9ULJ1 636 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 SNX9Q9Y5X1 595 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 RAD54BQ9Y620 910 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 CLIC4Q9Y696 253 aa9.91□□□□□ -0.82
SYNE2-224ENST00000557024 URB1O60287 2271 aaKnown RBP9.9□□□□□ -0.82
SYNE2-224ENST00000557024 PLXNB3Q9ULL4 1909 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 A0A1B0GTW7 788 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 GABRDO14764 452 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 SPTLC2O15270 562 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 HOXC11O43248 304 aaPredicted RBP9.9□□□□□ -0.82
SYNE2-224ENST00000557024 IL18RAPO95256 599 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 YEATS4O95619 227 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 CER1O95813 267 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 PLCG1P19174 1290 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 SCP2P22307 547 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 ANXA13P27216 316 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 PRPHP41219 470 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 MATKP42679 507 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 LHX1P48742 406 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 BNC1Q01954 994 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 ANO4Q32M45 955 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 SLFN12LQ6IEE8 588 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 SDE2Q6IQ49 451 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 FAM171BQ6P995 826 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 DDX42Q86XP3 938 aaKnown RBP eCLIP9.9□□□□□ -0.82
SYNE2-224ENST00000557024 TMEM25Q86YD3 366 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 CSGALNACT2Q8N6G5 542 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 C1orf127Q8N9H9 656 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 MRGPRX1Q96LB2 322 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 SYT15Q9BQS2 421 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 TTLL2Q9BWV7 592 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 PRORYQ9H606 182 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 PARVGQ9HBI0 331 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 CRTAC1Q9NQ79 661 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.9□□□□□ -0.82
SYNE2-224ENST00000557024 TBC1D14Q9P2M4 693 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.9□□□□□ -0.82
SYNE2-224ENST00000557024 BTBD3Q9Y2F9 522 aa9.9□□□□□ -0.82
SYNE2-224ENST00000557024 ZNF638Q14966 1978 aaKnown RBP9.9□□□□□ -0.83
SYNE2-224ENST00000557024 NAV2Q8IVL1 2488 aa9.9□□□□□ -0.83
SYNE2-224ENST00000557024 DENND4CQ5VZ89 1909 aa9.9□□□□□ -0.83
SYNE2-224ENST00000557024 PI4KAP42356 2102 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 SCN1AP35498 2009 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 E2F8A0AVK6 867 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 F8VP50 259 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 J3QKU1 62 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 LAD1O00515 517 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 FLRT2O43155 660 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 KRT19P08727 400 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 ZNF883P0CG24 379 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 NCAM1P13591 858 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 LMO2P25791 158 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 CD6P30203 668 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 ZNF131P52739 623 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 GTF2BQ00403 316 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 CYP27A1Q02318 531 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 IFRD2Q12894 506 aaPredicted RBP9.89□□□□□ -0.83
SYNE2-224ENST00000557024 TAF10Q12962 218 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 SOWAHAQ2M3V2 549 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 HLA-BQ31612 363 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 PREPLQ4J6C6 727 aaPredicted RBP9.89□□□□□ -0.83
SYNE2-224ENST00000557024 TMEM119Q4V9L6 283 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 GRAMD4Q6IC98 578 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 VSTM1Q6UX27 236 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 NT5DC4Q86YG4 428 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 BBS7Q8IWZ6 715 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 TOP6BLQ8N6T0 577 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 LRRC52Q8N7C0 313 aa9.89□□□□□ -0.83
SYNE2-224ENST00000557024 DNASE2BQ8WZ79 361 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms