RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 IRGQQ8WZA9 623 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 DDX1Q92499 740 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 BAP1Q92560 729 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 FAM149B1Q96BN6 582 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 ANP32EQ9BTT0 268 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 RBSNQ9H1K0 784 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 MFSD1Q9H3U5 465 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 GKN1Q9NS71 199 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 DUS2Q9NX74 493 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 WNT16Q9UBV4 365 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 DNMT3LQ9UJW3 386 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 NOCTQ9UK39 431 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 STRIP2Q9ULQ0 834 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 SH3BP1Q9Y3L3 701 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 WNT6Q9Y6F9 365 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 NCOR1O75376 2440 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 XIRP2A4UGR9 3374 aa12.01□□□□□ -0.49
CCDC88C-212ENST00000556767 CAPN9O14815 690 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 PAPSS1O43252 624 aaPredicted RBP12□□□□□ -0.49
CCDC88C-212ENST00000556767 SART1O43290 800 aaKnown RBP12□□□□□ -0.49
CCDC88C-212ENST00000556767 LTFP02788 710 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 HMBSP08397 361 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 KPNA1P52294 538 aaPredicted RBP12□□□□□ -0.49
CCDC88C-212ENST00000556767 USP4Q13107 963 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 SLC44A4Q53GD3 710 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 TRIM68Q6AZZ1 485 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 HFE2Q6ZVN8 426 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 TMEM110Q86TL2 294 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 ERICH1Q86X53 443 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 SCML4Q8N228 414 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 MSANTD4Q8NCY6 345 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 ZNF397Q8NF99 534 aaPredicted RBP12□□□□□ -0.49
CCDC88C-212ENST00000556767 RIN3Q8TB24 985 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 CPA5Q8WXQ8 436 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 DNASE1L2Q92874 299 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 CPXM1Q96SM3 734 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 AGPAT1Q99943 283 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 C1QTNF1Q9BXJ1 281 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 EDEM3Q9BZQ6 932 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 TRIM5Q9C035 493 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 EBF3Q9H4W6 596 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 ARHGEF3Q9NR81 526 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 ABCC13Q9NSE7 274 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 MARCH2Q9P0N8 246 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 TJP2Q9UDY2 1190 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 MYO6Q9UM54 1294 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12□□□□□ -0.49
CCDC88C-212ENST00000556767 TTC28Q96AY4 2481 aa12□□□□□ -0.49
CCDC88C-212ENST00000556767 SLC12A8A0AV02 714 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 LSM8O95777 96 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 ERBB2P04626 1255 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 NCAM1P13591 858 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 CHRNB2P17787 502 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 TNFAIP3P21580 790 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 PBX1P40424 430 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 RPL34P49207 117 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 ZXDBP98169 803 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 FMO1Q01740 532 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 TNK2Q07912 1038 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 PDGFRLQ15198 375 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 MLF2Q15773 248 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 PTPN20Q4JDL3 420 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 FIGNQ5HY92 759 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 TMEM31Q5JXX7 168 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 KLHDC10Q6PID8 442 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 TRIM72Q6ZMU5 477 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 BHLHA9Q7RTU4 235 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 GAS2L3Q86XJ1 694 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 FLCNQ8NFG4 579 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 OSCP1Q8WVF1 389 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 PBXIP1Q96AQ6 731 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 SHDQ96IW2 340 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 KLF16Q9BXK1 252 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 TTYH3Q9C0H2 523 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 HEBP1Q9NRV9 189 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 OLA1Q9NTK5 396 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 GTSE1Q9NYZ3 720 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 SFMBT1Q9UHJ3 866 aa11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 LSM7Q9UK45 103 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 HELZP42694 1942 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-212ENST00000556767 ITIH6Q6UXX5 1313 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 SLC9A3R1O14745 358 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 GRAP2O75791 330 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 PDGFBP01127 241 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 ARSAP15289 507 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 TCF3P15923 654 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 CDH5P33151 784 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 NOMO3P69849 1222 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 COG7P83436 770 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 KLHL30Q0D2K2 578 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 RUNX3Q13761 415 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 ITPRIPL2Q3MIP1 535 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 C2CD6Q53TS8 623 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 EFHC1Q5JVL4 640 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 IER5LQ5T953 404 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 SPECC1LQ69YQ0 1117 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 TPRG1Q6ZUI0 275 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 TOGARAM2Q6ZUX3 1019 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 FAM183BPQ6ZVS7 135 aa11.98□□□□□ -0.49
CCDC88C-212ENST00000556767 CPA6Q8N4T0 437 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms