RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	PHACTR2	O75167	634 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	GJB3	O75712	270 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	TYR	P14679	529 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	SLC5A3	P53794	718 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	CDH8	P55286	799 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	MYL6	P60660	151 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	CYP24A1	Q07973	514 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	WDR45B	Q5MNZ6	344 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	C19orf48	Q6RUI8	117 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	CCNI2	Q6ZMN8	369 aa	Predicted RBP	13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	PAQR9	Q6ZVX9	377 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	PDILT	Q8N807	584 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	ZNF507	Q8TCN5	953 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	ZNF516	Q92618	1163 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	ERLEC1	Q96DZ1	483 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	SMARCD1	Q96GM5	515 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	TNIP3	Q96KP6	325 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	GABRG3	Q99928	467 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	BBS2	Q9BXC9	721 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	CD248	Q9HCU0	757 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	DMAP1	Q9NPF5	467 aa	Predicted RBP	13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	AGPAT3	Q9NRZ7	376 aa		13.4	□□□□□ -0.26
SHMT2-223	ENST00000556689	HELZ	P42694	1942 aa	Known RBP	13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	FAM92A	A1XBS5	289 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	PRRT4	C9JH25	899 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	GFRA2	O00451	464 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	CLIC2	O15247	247 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	TGFB1I1	O43294	461 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	CACNG3	O60359	315 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	TLR5	O60602	858 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	AP1G2	O75843	785 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	PDC	P20941	246 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	MAOB	P27338	520 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	CYP2J2	P51589	502 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	SNRPF	P62306	86 aa	Known RBP	13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	AMPD3	Q01432	767 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	FAM173B	Q6P4H8	233 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	TPGS1	Q6ZTW0	290 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	FAM35A	Q86V20	835 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	NAXD	Q8IW45	347 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	PNPLA1	Q8N8W4	532 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	XXYLT1	Q8NBI6	393 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	MRGPRX1	Q96LB2	322 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	XYLT2	Q9H1B5	865 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	TNMD	Q9H2S6	317 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	FBXO44	Q9H4M3	255 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	CCDC86	Q9H6F5	360 aa	Known RBP	13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.39	□□□□□ -0.27	1e-9	■■■■■ 76.9
SHMT2-223	ENST00000556689	TLR8	Q9NR97	1041 aa	Known RBP	13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	APOBEC2	Q9Y235	224 aa	Known RBP	13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	RAD54B	Q9Y620	910 aa		13.39	□□□□□ -0.27
SHMT2-223	ENST00000556689	MYOF	Q9NZM1	2061 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	NBEA	Q8NFP9	2946 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	CACNA1E	Q15878	2313 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	GREM1	O60565	184 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	TBX18	O95935	607 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	FTH1P19	P0C7X4	201 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	CD6	P30203	668 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	ATP5C1	P36542	298 aa	Known RBP	13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	PI4KA	P42356	2102 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	DGKG	P49619	791 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	GOLGA8F	Q08AF8	430 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	GOLGA8DP	Q0D2H9	430 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	SLC39A14	Q15043	492 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	KIAA1324	Q6UXG2	1013 aa	Known RBP	13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	TOGARAM2	Q6ZUX3	1019 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	EPM2AIP1	Q7L775	607 aa	Predicted RBP	13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	GLRX5	Q86SX6	157 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	FUK	Q8N0W3	1084 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	SPRYD3	Q8NCJ5	442 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	KLF16	Q9BXK1	252 aa	Predicted RBP	13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	TRIM9	Q9C026	710 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	SLC6A17	Q9H1V8	727 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	SMYD3	Q9H7B4	428 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	VRTN	Q9H8Y1	702 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	KBTBD4	Q9NVX7	518 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	CACNA2D2	Q9NY47	1150 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	MARK1	Q9P0L2	795 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	LSM7	Q9UK45	103 aa	Known RBP	13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	DSP	P15924	2871 aa	Known RBP	13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	LAMA5	O15230	3695 aa		13.38	□□□□□ -0.27
SHMT2-223	ENST00000556689	TNRC6B	Q9UPQ9	1833 aa	Known RBP	13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689		A0A1B0GTW7	788 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	WASH3P	C4AMC7	463 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	CLSTN1	O94985	981 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	CISD3	P0C7P0	127 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	PGF	P49763	221 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	GRIK2	Q13002	908 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	ZNF667	Q5HYK9	610 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	ACOT1	Q86TX2	421 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	METTL3	Q86U44	580 aa	Known RBP	13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	SLCO6A1	Q86UG4	719 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	NELFCD	Q8IXH7	590 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	DNASE2B	Q8WZ79	361 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	TOE1	Q96GM8	510 aa	Known RBP	13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	SMO	Q99835	787 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	CSNK1G1	Q9HCP0	422 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	CD93	Q9NPY3	652 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	ITM2C	Q9NQX7	267 aa		13.37	□□□□□ -0.27

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