RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 RGL1Q9NZL6 768 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 STEAP1Q9UHE8 339 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 LINC01548A6NM66 108 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 H7C1Q1 480 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 SNX2O60749 519 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 NHLRC4P0CG21 123 aaPredicted RBP5.42□□□□□ -1.54
SCFD1-221ENST00000556534 CREB1P16220 341 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 ABCB4P21439 1286 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 RENBPP51606 427 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 EIF4A1P60842 406 aaKnown RBP5.42□□□□□ -1.54
SCFD1-221ENST00000556534 LMAN2Q12907 356 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 MTAPQ13126 283 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 ST3GAL2Q16842 350 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 PROSER3Q2NL68 480 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.42□□□□□ -1.54
SCFD1-221ENST00000556534 SUMO4Q6EEV6 95 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 TERB1Q8NA31 727 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 CCDC150Q8NCX0 1101 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 SUN3Q8TAQ9 357 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 HASPINQ8TF76 798 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 ZNF566Q969W8 418 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 C18orf8Q96DM3 657 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 DAZAP1Q96EP5 407 aaKnown RBP5.42□□□□□ -1.54
SCFD1-221ENST00000556534 STK33Q9BYT3 514 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 TMEM8AQ9HCN3 771 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 ASIC5Q9NY37 505 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 PTGFRNQ9P2B2 879 aa5.42□□□□□ -1.54
SCFD1-221ENST00000556534 ZMYND8Q9ULU4 1186 aaPredicted RBP5.42□□□□□ -1.54
SCFD1-221ENST00000556534 OR2W5A6NFC9 320 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 MANSC4A6NHS7 340 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-221ENST00000556534 PODXLO00592 558 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 TMPRSS11DO60235 418 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 PPFIA2O75334 1257 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 APEHP13798 732 aaKnown RBP5.41□□□□□ -1.54
SCFD1-221ENST00000556534 CD19P15391 556 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 PECAM1P16284 738 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-221ENST00000556534 HTR3AP46098 478 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 HOXA4Q00056 320 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-221ENST00000556534 DEUP1Q05D60 604 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 HDAC1Q13547 482 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-221ENST00000556534 ACOX1Q15067 660 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 TOGARAM2Q6ZUX3 1019 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 BCDIN3DQ7Z5W3 292 aaKnown RBP5.41□□□□□ -1.54
SCFD1-221ENST00000556534 MORC1Q86VD1 984 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 KRT73Q86Y46 540 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 FSTL5Q8N475 847 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-221ENST00000556534 DPF1Q92782 380 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 SNX15Q9NRS6 342 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 NKX1-2Q9UD57 310 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-221ENST00000556534 ASAP1Q9ULH1 1129 aa5.41□□□□□ -1.54
SCFD1-221ENST00000556534 TISP43B9A030 160 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 SMIM22K7EJ46 135 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 EXOC3O60645 756 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 COQ9O75208 318 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 WDR47O94967 919 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 IDEP14735 1019 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 ADRA1DP25100 572 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 ARHGAP15Q53QZ3 475 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 GRHL2Q6ISB3 625 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 PTF1AQ7RTS3 328 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.4□□□□□ -1.54
SCFD1-221ENST00000556534 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.4□□□□□ -1.546e-9■□□□□ 8.9
SCFD1-221ENST00000556534 SLC52A1Q9NWF4 448 aa5.4□□□□□ -1.54
SCFD1-221ENST00000556534 FNDC1Q4ZHG4 1894 aaPredicted RBP5.39□□□□□ -1.55
SCFD1-221ENST00000556534 TCRBV5S1A1TA0A578 114 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 CCNT2O60583 730 aaKnown RBP5.39□□□□□ -1.55
SCFD1-221ENST00000556534 PLA2G6O60733 806 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 TMEM225BP0DP42 221 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 PPM1AP35813 382 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 IL6STP40189 918 aaPredicted RBP5.39□□□□□ -1.55
SCFD1-221ENST00000556534 BTKQ06187 659 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 NSUN2Q08J23 767 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCFD1-221ENST00000556534 ATP1A4Q13733 1029 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 RAB30Q15771 203 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 MAPKAPK3Q16644 382 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 AASDHQ4L235 1098 aaPredicted RBP5.39□□□□□ -1.55
SCFD1-221ENST00000556534 TMTC4Q5T4D3 741 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 DENND2CQ68D51 928 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 SYCE2Q6PIF2 218 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 FBXO38Q6PIJ6 1188 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 ZNF782Q6ZMW2 699 aaPredicted RBP5.39□□□□□ -1.55
SCFD1-221ENST00000556534 PNPLA1Q8N8W4 532 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 SEMA6DQ8NFY4 1073 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 RITA1Q96K30 269 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 NECTIN3Q9NQS3 549 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 TM7SF3Q9NS93 570 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 TMOD4Q9NZQ9 345 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 MGAT4CQ9UBM8 478 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 CDC23Q9UJX2 597 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 SLC39A10Q9ULF5 831 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 CEP83Q9Y592 693 aa5.39□□□□□ -1.55
SCFD1-221ENST00000556534 OVOL3O00110 214 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 PCDH17O14917 1159 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 HNRNPDLO14979 420 aaKnown RBP5.38□□□□□ -1.55
SCFD1-221ENST00000556534 DHHO43323 396 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 CA12O43570 354 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 PRKCGP05129 697 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 YY1P25490 414 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 CD38P28907 300 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 PBX1P40424 430 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms