RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 HELZP42694 1942 aaKnown RBP10.72□□□□□ -0.69
SCFD1-220ENST00000556486 PLXNB3Q9ULL4 1909 aa10.72□□□□□ -0.69
SCFD1-220ENST00000556486 GON4LQ3T8J9 2241 aa10.72□□□□□ -0.69
SCFD1-220ENST00000556486 K7EQS6 105 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 TADA3O75528 432 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 KLF8O95600 359 aaPredicted RBP10.71□□□□□ -0.69
SCFD1-220ENST00000556486 PCSK2P16519 638 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 PDCP20941 246 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 GARTP22102 1010 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 IFNAR2P48551 515 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 ATXN3P54252 364 aaPredicted RBP10.71□□□□□ -0.69
SCFD1-220ENST00000556486 AMPD2Q01433 879 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 LMAN2Q12907 356 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 PDGFRLQ15198 375 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 CFAP221Q4G0U5 840 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 L1TD1Q5T7N2 865 aaKnown RBP10.71□□□□□ -0.69
SCFD1-220ENST00000556486 EMC10Q5UCC4 262 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 LPCAT2Q7L5N7 544 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 MARCH9Q86YJ5 346 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 TMEM86AQ8N2M4 240 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 ALLCQ8N6M5 410 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 OSCP1Q8WVF1 389 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 HMGB4Q8WW32 186 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 POMGNT1Q8WZA1 660 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 MRPS31Q92665 395 aaKnown RBP10.71□□□□□ -0.69
SCFD1-220ENST00000556486 CNOT6LQ96LI5 555 aaKnown RBP10.71□□□□□ -0.69
SCFD1-220ENST00000556486 ZHX3Q9H4I2 956 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 UPF2Q9HAU5 1272 aaKnown RBP10.71□□□□□ -0.69
SCFD1-220ENST00000556486 GDAP2Q9NXN4 497 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 BCCIPQ9P287 314 aaKnown RBP eCLIP10.71□□□□□ -0.69
SCFD1-220ENST00000556486 EXOC7Q9UPT5 735 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 RAXQ9Y2V3 346 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 PCDHB5Q9Y5E4 795 aa10.71□□□□□ -0.69
SCFD1-220ENST00000556486 ANAPC1Q9H1A4 1944 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 C2orf78A6NCI8 922 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 MYMKA6NI61 221 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 EIF4E1BA6NMX2 242 aaKnown RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 EIF1AYO14602 144 aaKnown RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 GABRDO14764 452 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 KIAA0391O15091 583 aaKnown RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 NOL4O94818 638 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 LDHAP00338 332 aaKnown RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 CKMP06732 381 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 CSH1P0DML2 217 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 CSH2P0DML3 217 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 OPRD1P41143 372 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 TSPY1Q01534 308 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 KDSRQ06136 332 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 SEMA3BQ13214 749 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 ORC1Q13415 861 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 ZNF77Q15935 545 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 CRY1Q16526 586 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 DDR2Q16832 855 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 LIMS2Q7Z4I7 341 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 RAB44Q7Z6P3 723 aaPredicted RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 MON1AQ86VX9 555 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 RASSF3Q86WH2 238 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 SYT12Q8IV01 421 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 ZNF295-AS1Q8N0V1 137 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 PGBD3Q8N328 593 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 PDCL2Q8N4E4 241 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 HDDC3Q8N4P3 179 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 C1orf127Q8N9H9 656 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 TXNDC5Q8NBS9 432 aaKnown RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 ATP2A3Q93084 1043 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 FUBP3Q96I24 572 aaKnown RBP eCLIP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 CEP295NLQ96MC4 621 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 ACCSQ96QU6 501 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 PHACTR1Q9C0D0 580 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 IKZF4Q9H2S9 585 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 MRPL44Q9H9J2 332 aaKnown RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 CUEDC1Q9NWM3 386 aaPredicted RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 UXTQ9UBK9 157 aaPredicted RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 CCDC39Q9UFE4 941 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 EVLQ9UI08 416 aaPredicted RBP10.7□□□□□ -0.7
SCFD1-220ENST00000556486 ITGA11Q9UKX5 1188 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 MMP17Q9ULZ9 603 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 L1RE1Q9UN81 338 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 PCDH15Q96QU1 1955 aa10.7□□□□□ -0.7
SCFD1-220ENST00000556486 MYOFQ9NZM1 2061 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 HELZ2Q9BYK8 2649 aaKnown RBP10.69□□□□□ -0.7
SCFD1-220ENST00000556486 SGK1O00141 431 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 HCRTO43612 131 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 SH3BP5O60239 455 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 OPHN1O60890 802 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 ACAT1P24752 427 aaKnown RBP10.69□□□□□ -0.7
SCFD1-220ENST00000556486 TXLNAP40222 546 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 P2RY2P41231 377 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 SLC6A11P48066 632 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 RPL10AP62906 217 aaKnown RBP10.69□□□□□ -0.7
SCFD1-220ENST00000556486 CLN3Q13286 438 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 RRAGBQ5VZM2 374 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 LYSMD4Q5XG99 296 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 CCDC73Q6ZRK6 1079 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 SV2BQ7L1I2 683 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 DYMQ7RTS9 669 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 MINDY1Q8N5J2 469 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 TOP6BLQ8N6T0 577 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 KIAA1958Q8N8K9 716 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 ARL14EPQ8N8R7 260 aaPredicted RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms