RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 FAM86C1Q9NVL1 165 aa21.68■■□□□ 1.06
CCDC88C-210ENST00000555995 STRIP2Q9ULQ0 834 aa21.68■■□□□ 1.06
CCDC88C-210ENST00000555995 OTOL1A6NHN0 477 aaPredicted RBP21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 PES1O00541 588 aaKnown RBP21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 ATG13O75143 517 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 PAPSS2O95340 614 aaPredicted RBP21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 CYP17A1P05093 508 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 SLC9A1P19634 815 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 BRD2P25440 801 aaKnown RBP21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 PON1P27169 355 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 HOXD11P31277 338 aaPredicted RBP21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 YWHAGP61981 247 aaKnown RBP eCLIP21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 ADIGQ0VDE8 80 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 DHCR24Q15392 516 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 TCP11X2Q5H9J9 407 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 HTR3DQ70Z44 454 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 SCD5Q86SK9 330 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 ADGRG2Q8IZP9 1017 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 ANKRD20A12PQ8NF67 263 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 UBA3Q8TBC4 463 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 TFAP2BQ92481 460 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 HSFY1Q96LI6 401 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 ULBP1Q9BZM6 244 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 OSER1Q9NX31 292 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 ZNF510Q9Y2H8 683 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 PCDHGA2Q9Y5H1 932 aa21.67■■□□□ 1.06
CCDC88C-210ENST00000555995 RNF225M0QZC1 329 aaPredicted RBP21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 SART1O43290 800 aaKnown RBP21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 FBXO21O94952 628 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 IRF1P10914 325 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 ADH5P11766 374 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 GNA15P30679 374 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 CXCL12P48061 93 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 CSTF1Q05048 431 aaKnown RBP21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 GAD2Q05329 585 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 BTBD8Q5XKL5 378 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 SLC35F5Q8WV83 523 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 IRGQQ8WZA9 623 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 SHC3Q92529 594 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 GOLGA1Q92805 767 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 DCLK3Q9C098 648 aa21.66■■□□□ 1.06
CCDC88C-210ENST00000555995 TBX18O95935 607 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 PTMSP20962 102 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 ACADSBP45954 432 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 PGFP49763 221 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 MRE11P49959 708 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 MIIPQ5JXC2 388 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 FSTL4Q6MZW2 842 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 MAML2Q8IZL2 1156 aaPredicted RBP21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 RNF139Q8WU17 664 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 SECISBP2LQ93073 1101 aaKnown RBP21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 NKD2Q969F2 451 aaPredicted RBP21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 ACDQ96AP0 544 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 TRIM62Q9BVG3 475 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 NAT10Q9H0A0 1025 aaKnown RBP21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 ABCC13Q9NSE7 274 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 SAMSN1Q9NSI8 373 aaKnown RBP21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 RBM12Q9NTZ6 932 aaKnown RBP21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 ZSCAN32Q9NX65 697 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 RASAL2Q9UJF2 1139 aa21.65■■□□□ 1.06
CCDC88C-210ENST00000555995 KIAA1549LQ6ZVL6 1849 aa21.64■■□□□ 1.06
CCDC88C-210ENST00000555995 THAP12O43422 761 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 USP8P40818 1118 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 GALK1P51570 392 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 MYL5Q02045 173 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 ARHGAP44Q17R89 818 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 HSP90AA4PQ58FG1 418 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 CDKAL1Q5VV42 579 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 NUDT18Q6ZVK8 323 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 BBS7Q8IWZ6 715 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 STK32AQ8WU08 396 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 CHFRQ96EP1 664 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 DAAM1Q9Y4D1 1078 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 PIEZO1Q92508 2521 aa21.64■■□□□ 1.05
CCDC88C-210ENST00000555995 CHURC1-FNTBB4DL54 471 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 TULP2O00295 520 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 HOXC11O43248 304 aaPredicted RBP21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 LETM1O95202 739 aaPredicted RBP21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 DAOAP59103 153 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 BPIFB4P59827 614 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 PTK2Q05397 1052 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 EFEMP1Q12805 493 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 FKBP15Q5T1M5 1219 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 MIB1Q86YT6 1006 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 ATRIPQ8WXE1 791 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 PLD4Q96BZ4 506 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 SPHK2Q9NRA0 654 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 MARCH2Q9P0N8 246 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 DNAJC12Q9UKB3 198 aa21.63■■□□□ 1.05
CCDC88C-210ENST00000555995 EGFP01133 1207 aa21.62■■□□□ 1.05
CCDC88C-210ENST00000555995 LCP1P13796 627 aa21.62■■□□□ 1.05
CCDC88C-210ENST00000555995 OPRD1P41143 372 aa21.62■■□□□ 1.05
CCDC88C-210ENST00000555995 LY6G5CQ5SRR4 150 aa21.62■■□□□ 1.05
CCDC88C-210ENST00000555995 PMF1Q6P1K2 205 aa21.62■■□□□ 1.05
CCDC88C-210ENST00000555995 RHBDF2Q6PJF5 856 aa21.62■■□□□ 1.05
CCDC88C-210ENST00000555995 Q6ZS52 159 aa21.62■■□□□ 1.05
CCDC88C-210ENST00000555995 ALYREFQ86V81 257 aaKnown RBP21.62■■□□□ 1.05
CCDC88C-210ENST00000555995 ZNF606Q8WXB4 792 aa21.62■■□□□ 1.05
CCDC88C-210ENST00000555995 NELL1Q92832 810 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms