RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 CAPN8A6NHC0 703 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 RASSF9O75901 435 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 PIAS2O75928 621 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 PARP1P09874 1014 aaKnown RBP4.87□□□□□ -1.63
SCFD1-217ENST00000555953 ARHGEF7Q14155 803 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 SLC9C1Q4G0N8 1177 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 C12orf76Q8N812 135 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-217ENST00000555953 C11orf44Q8N8P7 122 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 WIPF2Q8TF74 440 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-217ENST00000555953 STAG1Q8WVM7 1258 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 CAMK1GQ96NX5 476 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 TRMOQ9BU70 441 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 STK31Q9BXU1 1019 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 ZBTB40Q9NUA8 1239 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 TYW1Q9NV66 732 aaKnown RBP4.87□□□□□ -1.63
SCFD1-217ENST00000555953 MAFFQ9ULX9 164 aa4.87□□□□□ -1.63
SCFD1-217ENST00000555953 A8MVJ9 347 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 B4DGG1 531 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 FYB1O15117 783 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 IBSPP21815 317 aaPredicted RBP4.86□□□□□ -1.63
SCFD1-217ENST00000555953 GPC5P78333 572 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 MTX1Q13505 466 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 C3orf38Q5JPI3 329 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 APOA5Q6Q788 366 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 COLCA1Q6ZS62 124 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 PIM3Q86V86 326 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 C16orf71Q8IYS4 520 aaPredicted RBP4.86□□□□□ -1.63
SCFD1-217ENST00000555953 KIAA0319LQ8IZA0 1049 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 PNPLA1Q8N8W4 532 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 RUNDC1Q96C34 613 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 NMD3Q96D46 503 aaKnown RBP4.86□□□□□ -1.63
SCFD1-217ENST00000555953 HIC2Q96JB3 615 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 LYZL4Q96KX0 146 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 FAM234AQ9H0X4 552 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 CDH19Q9H159 772 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 TMEM60Q9H2L4 133 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 DHX36Q9H2U1 1008 aaKnown RBP4.86□□□□□ -1.63
SCFD1-217ENST00000555953 HDAC9Q9UKV0 1011 aa4.86□□□□□ -1.63
SCFD1-217ENST00000555953 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.85□□□□□ -1.63
SCFD1-217ENST00000555953 FAM90A8PA6NJQ4 464 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 PRR23D1E9PI22 279 aaPredicted RBP4.85□□□□□ -1.63
SCFD1-217ENST00000555953 SMAD6O43541 496 aaKnown RBP4.85□□□□□ -1.63
SCFD1-217ENST00000555953 MARCH6O60337 910 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 CTNND1O60716 968 aaKnown RBP4.85□□□□□ -1.63
SCFD1-217ENST00000555953 TULP3O75386 442 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 RFPL1O75677 317 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 FAM90A13PP0C7W8 464 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 FAM90A24PP0C7X0 464 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 PRR23D2P0DMB1 279 aaPredicted RBP4.85□□□□□ -1.63
SCFD1-217ENST00000555953 BRAFP15056 766 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 NTSR1P30989 418 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 HSF1Q00613 529 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 STK3Q13188 491 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 KRTAP5-11Q6L8G4 156 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 USP49Q70CQ1 688 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 UBE2Q1Q7Z7E8 422 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 USP29Q9HBJ7 922 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 WWOXQ9NZC7 414 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 NKX1-2Q9UD57 310 aaPredicted RBP4.85□□□□□ -1.63
SCFD1-217ENST00000555953 AFF4Q9UHB7 1163 aaKnown RBP4.85□□□□□ -1.63
SCFD1-217ENST00000555953 FZD4Q9ULV1 537 aa4.85□□□□□ -1.63
SCFD1-217ENST00000555953 CFAP69A5D8W1 941 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 RAB27BO00194 218 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 PRAMEF2O60811 474 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 IL1R1P14778 569 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 TNFRSF1BP20333 461 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 ADRA1DP25100 572 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 ACVR2AP27037 513 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 TACR3P29371 465 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 CPA2P48052 419 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 RPS16P62249 146 aaKnown RBP4.84□□□□□ -1.63
SCFD1-217ENST00000555953 STIM1Q13586 685 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 ERV3-1Q14264 604 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 SLC29A2Q14542 456 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 SEMA3AQ14563 771 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 KPNB1Q14974 876 aaKnown RBP4.84□□□□□ -1.63
SCFD1-217ENST00000555953 CNN3Q15417 329 aaKnown RBP4.84□□□□□ -1.63
SCFD1-217ENST00000555953 MMP21Q8N119 569 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 PELI3Q8N2H9 469 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 NGDNQ8NEJ9 315 aaKnown RBP4.84□□□□□ -1.63
SCFD1-217ENST00000555953 TM2D2Q9BX73 214 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 L1RE1Q9UN81 338 aa4.84□□□□□ -1.63
SCFD1-217ENST00000555953 TTBK1Q5TCY1 1321 aaPredicted RBP4.83□□□□□ -1.64
SCFD1-217ENST00000555953 ISM1B1AKI9 464 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 FAM227AF5H4B4 570 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 RRHO14718 337 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 INPPL1O15357 1258 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 FRS3O43559 492 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 CA12O43570 354 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 PDGFRBP09619 1106 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 TXNP10599 105 aaKnown RBP4.83□□□□□ -1.64
SCFD1-217ENST00000555953 CD19P15391 556 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 CPT1AP50416 773 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 CNGA2Q16280 664 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 ST3GAL2Q16842 350 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 PFKFB3Q16875 520 aaPredicted RBP4.83□□□□□ -1.64
SCFD1-217ENST00000555953 ZNF793Q6ZN11 406 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 MPLKIPQ8TAP9 179 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 SCNM1Q9BWG6 230 aa4.83□□□□□ -1.64
SCFD1-217ENST00000555953 MLXIPLQ9NP71 852 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms