RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 CAPN9O14815 690 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 ZSCAN12O43309 604 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 NOS2P35228 1153 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 MATKP42679 507 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 RNASE9P60153 205 aaKnown RBP13.05□□□□□ -0.32
SHMT2-221ENST00000555773 SKIV2LQ15477 1246 aaKnown RBP13.05□□□□□ -0.32
SHMT2-221ENST00000555773 TAF5Q15542 800 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 PHLDB2Q86SQ0 1253 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 SMRP1Q8NCR6 262 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 SLC35G2Q8TBE7 412 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 FNIP1Q8TF40 1166 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 RNF139Q8WU17 664 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 RFFLQ8WZ73 363 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 HLA-CQ95604 372 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 TRIM44Q96DX7 344 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-221ENST00000555773 NECTIN4Q96NY8 510 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 DESI2Q9BSY9 194 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 DDX23Q9BUQ8 820 aaKnown RBP13.05□□□□□ -0.32
SHMT2-221ENST00000555773 TSGA10Q9BZW7 698 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 UBE2ZQ9H832 354 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-221ENST00000555773 NMUR1Q9HB89 426 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.05□□□□□ -0.32
SHMT2-221ENST00000555773 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.05□□□□□ -0.32
SHMT2-221ENST00000555773 CTTNBP2NLQ9P2B4 639 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 CD207Q9UJ71 328 aa13.05□□□□□ -0.32
SHMT2-221ENST00000555773 MRPS23Q9Y3D9 190 aaKnown RBP13.05□□□□□ -0.32
SHMT2-221ENST00000555773 A0A1W2PRU2 124 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 C2CD4BA6NLJ0 364 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 DAB1O75553 588 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 MTA2O94776 668 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 ABL1P00519 1130 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 FYNP06241 537 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 NCAM1P13591 858 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 RARGP13631 454 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 PDGFRAP16234 1089 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 DESP17661 470 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 FSHRP23945 695 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 RFC1P35251 1148 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-221ENST00000555773 ATP5C1P36542 298 aaKnown RBP13.04□□□□□ -0.32
SHMT2-221ENST00000555773 HADHBP55084 474 aaKnown RBP13.04□□□□□ -0.32
SHMT2-221ENST00000555773 PRSS36Q5K4E3 855 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 HFE2Q6ZVN8 426 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 DEFB106AQ8N104 65 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 SHKBP1Q8TBC3 707 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 ARHGEF26Q96DR7 871 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 PIWIL1Q96J94 861 aaKnown RBP13.04□□□□□ -0.32
SHMT2-221ENST00000555773 NUP85Q9BW27 656 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 APOL5Q9BWW9 433 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 TASP1Q9H6P5 420 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 METTL5Q9NRN9 209 aaKnown RBP13.04□□□□□ -0.32
SHMT2-221ENST00000555773 OSER1Q9NX31 292 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 STAP1Q9ULZ2 295 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 PPP2R2CQ9Y2T4 447 aa13.04□□□□□ -0.32
SHMT2-221ENST00000555773 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.04□□□□□ -0.328e-7■■□□□ 12.4
SHMT2-221ENST00000555773 COL4A4P53420 1690 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-221ENST00000555773 PTPRDP23468 1912 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 RCCD1A6NED2 376 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 MYO1FO00160 1098 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 CCP110O43303 1012 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 ATMINO43313 823 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-221ENST00000555773 KRT86O43790 486 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 TLR5O60602 858 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 MOSPD3O75425 235 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 TADA3O75528 432 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 GRAP2O75791 330 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 F9P00740 461 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 HDCP19113 662 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 WEE1P30291 646 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 CCR2P41597 374 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 ARHGAP25P42331 645 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 PTPN9P43378 593 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 PGFP49763 221 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 KPNA1P52294 538 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-221ENST00000555773 ZNF143P52747 638 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-221ENST00000555773 RPL7AP62424 266 aaKnown RBP13.03□□□□□ -0.32
SHMT2-221ENST00000555773 NTHL1P78549 312 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 ACAP1Q15027 740 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 IFI16Q16666 785 aaKnown RBP13.03□□□□□ -0.32
SHMT2-221ENST00000555773 SLC25A52Q3SY17 297 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 DCAF6Q58WW2 860 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 SYPL2Q5VXT5 272 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 MSANTD2Q6P1R3 559 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 RSRC2Q7L4I2 434 aaKnown RBP13.03□□□□□ -0.32
SHMT2-221ENST00000555773 RNF10Q8N5U6 811 aaKnown RBP13.03□□□□□ -0.32
SHMT2-221ENST00000555773 ZNF564Q8TBZ8 553 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-221ENST00000555773 RXFP2Q8WXD0 754 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 PPM1EQ8WY54 764 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 SUSD6Q92537 303 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 EDEM1Q92611 657 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 NT5C3BQ969T7 300 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 TCEAL4Q96EI5 215 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 MCEEQ96PE7 176 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 NCAPGQ9BPX3 1015 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 LACRTQ9GZZ8 138 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.03□□□□□ -0.32
SHMT2-221ENST00000555773 GDE1Q9NZC3 331 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 IP6K2Q9UHH9 426 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 DNMT3LQ9UJW3 386 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 NAALADL1Q9UQQ1 740 aa13.03□□□□□ -0.32
SHMT2-221ENST00000555773 SZT2Q5T011 3432 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms