RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 SPATA17Q96L03 361 aa11.28□□□□□ -0.6
TDP1-211ENST00000555178 MAGEB5Q9BZ81 275 aa11.28□□□□□ -0.6
TDP1-211ENST00000555178 UBXN6Q9BZV1 441 aa11.28□□□□□ -0.6
TDP1-211ENST00000555178 LMAN2LQ9H0V9 348 aa11.28□□□□□ -0.6
TDP1-211ENST00000555178 IL21Q9HBE4 155 aa11.28□□□□□ -0.6
TDP1-211ENST00000555178 WDR35Q9P2L0 1181 aa11.28□□□□□ -0.6
TDP1-211ENST00000555178 STK39Q9UEW8 545 aa11.28□□□□□ -0.6
TDP1-211ENST00000555178 DOCK8Q8NF50 2099 aa11.27□□□□□ -0.6
TDP1-211ENST00000555178 C2CD4BA6NLJ0 364 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 KIF2AO00139 706 aaPredicted RBP11.27□□□□□ -0.61
TDP1-211ENST00000555178 TRIM66O15016 1216 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 IGFBP4P22692 258 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 ACADSBP45954 432 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 TUFMP49411 452 aaKnown RBP11.27□□□□□ -0.61
TDP1-211ENST00000555178 TAS2R40P59535 323 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 AMPD2Q01433 879 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 CREMQ03060 361 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 SMARCB1Q12824 385 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 IFI16Q16666 785 aaKnown RBP11.27□□□□□ -0.61
TDP1-211ENST00000555178 STXBP5Q5T5C0 1151 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 TMC8Q8IU68 726 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 MICALL1Q8N3F8 863 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 KIF18AQ8NI77 898 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 RXFP2Q8WXD0 754 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 SMARCAL1Q9NZC9 954 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 EHD2Q9NZN4 543 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 JRKLQ9Y4A0 524 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 ZMYND10O75800 440 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 URI1O94763 535 aaPredicted RBP11.27□□□□□ -0.61
TDP1-211ENST00000555178 PROSCO94903 275 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 PSMA2P25787 234 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 GJC1P36383 396 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 ALDH1A3P47895 512 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 RPL10AP62906 217 aaKnown RBP11.27□□□□□ -0.61
TDP1-211ENST00000555178 ATP11AP98196 1134 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 SLC5A9Q2M3M2 681 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 TXNRD3NBQ6F5E7 133 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 TMC5Q6UXY8 1006 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 GAREM2Q75VX8 874 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 SLC26A9Q7LBE3 791 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 DEFB106AQ8N104 65 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 ST13P5Q8NFI4 369 aaPredicted RBP11.27□□□□□ -0.61
TDP1-211ENST00000555178 COG1Q8WTW3 980 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 MYLIPQ8WY64 445 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 ALG3Q92685 438 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 ACSF2Q96CM8 615 aaPredicted RBP11.27□□□□□ -0.61
TDP1-211ENST00000555178 SLC22A12Q96S37 553 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 CYLDQ9NQC7 956 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 TMPRSS4Q9NRS4 437 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 KLHL11Q9NVR0 708 aa11.27□□□□□ -0.61
TDP1-211ENST00000555178 DNMT3BQ9UBC3 853 aaKnown RBP11.27□□□□□ -0.61
TDP1-211ENST00000555178 CCDC195A0A1B0GUA6 201 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 FAM92AA1XBS5 289 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 DDX3YO15523 660 aaKnown RBP11.26□□□□□ -0.61
TDP1-211ENST00000555178 SPOPO43791 374 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 MOSPD3O75425 235 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 PDGFRAP16234 1089 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 YWHAQP27348 245 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 CCDC14Q49A88 953 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 DCAF12L1Q5VU92 463 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 BSPRYQ5W0U4 402 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 PDE12Q6L8Q7 609 aaKnown RBP11.26□□□□□ -0.61
TDP1-211ENST00000555178 AADACL2Q6P093 401 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 CD101Q93033 1021 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 FBXO32Q969P5 355 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 PSMG2Q969U7 264 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 GUCD1Q96NT3 240 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 TTLL2Q9BWV7 592 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 NSUN3Q9H649 340 aaKnown RBP11.26□□□□□ -0.61
TDP1-211ENST00000555178 CCSER2Q9H7U1 834 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 PNPLA8Q9NP80 782 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 CNGB3Q9NQW8 809 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 CLEC1BQ9P126 229 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 SCML2Q9UQR0 700 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 HELZP42694 1942 aaKnown RBP11.26□□□□□ -0.61
TDP1-211ENST00000555178 MYOFQ9NZM1 2061 aa11.26□□□□□ -0.61
TDP1-211ENST00000555178 C2orf78A6NCI8 922 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 TBX10O75333 385 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 LRCH4O75427 683 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 F11P03951 625 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 GPD1P21695 349 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 LTBRP36941 435 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 YWHAGP61981 247 aaKnown RBP eCLIP11.25□□□□□ -0.61
TDP1-211ENST00000555178 CYP4F8P98187 520 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 LLGL1Q15334 1064 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 CCDC85BQ15834 202 aaPredicted RBP11.25□□□□□ -0.61
TDP1-211ENST00000555178 ATP13A4Q4VNC1 1196 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 HABP4Q5JVS0 413 aaKnown RBP11.25□□□□□ -0.61
TDP1-211ENST00000555178 PPM1LQ5SGD2 360 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 SYCE2Q6PIF2 218 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 ZDHHC17Q8IUH5 632 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 SYCE1Q8N0S2 351 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 WBP2Q969T9 261 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 HES6Q96HZ4 224 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 CAPZA3Q96KX2 299 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 CYP2S1Q96SQ9 504 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 CORO1BQ9BR76 489 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 ANLNQ9NQW6 1124 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 HSFX1Q9UBD0 423 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 IP6K2Q9UHH9 426 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms