RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 MTRF1LQ9UGC7 380 aaKnown RBP13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 DCDC2CA8MYV0 355 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 OPA1O60313 960 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 AMHP03971 560 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 FYNP06241 537 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 PBX3P40426 434 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 ACADSBP45954 432 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 OR1G1P47890 313 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 GLB1LQ6UWU2 654 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 PQLC3Q8N755 202 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 PCDH19Q8TAB3 1148 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 TBC1D13Q9NVG8 400 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 CDH9Q9ULB4 789 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 HEY1Q9Y5J3 304 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 MYO18AQ92614 2054 aaKnown RBP13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 ACSL3O95573 720 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 SELPP16109 830 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 CDK7P50613 346 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 IFRD2Q12894 506 aaPredicted RBP13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 NME3Q13232 169 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 OVOS1Q6IE37 1185 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 SPATA18Q8TC71 538 aa13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 NKD2Q969F2 451 aaPredicted RBP13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 CDC42EP4Q9H3Q1 356 aaKnown RBP13.29□□□□□ -0.28
VIPAS39-206ENST00000553888 TTC36A6NLP5 189 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 HHLA1C9JL84 531 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 GOLGA8MH3BSY2 632 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 BANF1O75531 89 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 ITIH2P19823 946 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 MATKP42679 507 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 PTPN9P43378 593 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 LMAN1P49257 510 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 ATP1A2P50993 1020 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 CCL23P55773 120 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 SLC8A3P57103 927 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 EIF3EP60228 445 aaKnown RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 ANKRD20A8PQ5CZ79 823 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 NOMO2Q5JPE7 1267 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 FAM71DQ8N9W8 422 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 EDEM1Q92611 657 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 CENPIQ92674 756 aaPredicted RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 RNF157Q96PX1 679 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 KCTD15Q96SI1 283 aaPredicted RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 MAK16Q9BXY0 300 aaKnown RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 PABPC3Q9H361 631 aaKnown RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 MTMR10Q9NXD2 777 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 NR2E3Q9Y5X4 410 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 M0QZQ0 153 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 L1CAMP32004 1257 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 SNX16P57768 344 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 YWHAZP63104 245 aaKnown RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 RNASELQ05823 741 aaKnown RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 MTMR3Q13615 1198 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 INTS6LQ5JSJ4 861 aaKnown RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 DRICH1Q6PGQ1 229 aaPredicted RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 SYDE1Q6ZW31 735 aaPredicted RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 PLD5Q8N7P1 536 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 CCDC89Q8N998 374 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 RNF208Q9H0X6 261 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 TMBIM4Q9HC24 238 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 ANLNQ9NQW6 1124 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 FEZ2Q9UHY8 353 aaPredicted RBP13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 AP4E1Q9UPM8 1137 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 SQORQ9Y6N5 450 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 MYO16Q9Y6X6 1858 aa13.28□□□□□ -0.28
VIPAS39-206ENST00000553888 GOLGA8KD6RF30 607 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 APOC4-APOC2K7ER74 178 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 RIPK2O43353 540 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 CAND2O75155 1236 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 APOC2P02655 101 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 ITGAVP06756 1048 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 RBP3P10745 1247 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 SLCO1A2P46721 670 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 EFHC1Q5JVL4 640 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 ERMARDQ5T6L9 678 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 COLGALT2Q8IYK4 626 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 SCAMP5Q8TAC9 235 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 PKMYT1Q99640 499 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 PPP1R12CQ9BZL4 782 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 UBN1Q9NPG3 1134 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 PIGVQ9NUD9 493 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 ETNK2Q9NVF9 386 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 NUP205Q92621 2012 aa13.27□□□□□ -0.28
VIPAS39-206ENST00000553888 M0QYT0 321 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 SKIP12755 728 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 PCSK1P29120 753 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 PGFP49763 221 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 IFFO1Q0D2I5 559 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 KYNUQ16719 465 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 KRT71Q3SY84 523 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 BOLA3Q53S33 107 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 ANKRD22Q5VYY1 191 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 HIBCHQ6NVY1 386 aaPredicted RBP13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 DCLRE1AQ6PJP8 1040 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 BHLHA9Q7RTU4 235 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 METTL23Q86XA0 190 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM76AQ8TAV0 307 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 EPS8L3Q8TE67 593 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms