RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 GJA5P36382 358 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 CETN2P41208 172 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 INHBCP55103 352 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 THOC5Q13769 683 aaKnown RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 KCTD2Q14681 263 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 KRT72Q14CN4 511 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 SURF1Q15526 300 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 AMHR2Q16671 573 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 EAPPQ56P03 285 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 KCNT1Q5JUK3 1230 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 JADE1Q6IE81 842 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 CCDC80Q76M96 950 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 KBTBD2Q8IY47 623 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 NME8Q8N427 588 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 ZCCHC9Q8N567 271 aaKnown RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 NIPA2Q8N8Q9 360 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 WDR60Q8WVS4 1066 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 ANKRD36BP1Q96IX9 119 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 CPB2Q96IY4 423 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 HIC2Q96JB3 615 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 TUBGCP5Q96RT8 1024 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 RBM15Q96T37 977 aaKnown RBP eCLIP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 ELOVL4Q9GZR5 314 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 SMARCAD1Q9H4L7 1026 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 HEY2Q9UBP5 337 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 ZNF148Q9UQR1 794 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 TNFSF13BQ9Y275 285 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 TMEM221A6NGB7 291 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 DNALI1O14645 258 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 DNAJC6O75061 913 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 LRCH4O75427 683 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 ERBB2P04626 1255 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 CD48P09326 243 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 ESRRAP11474 423 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 INSRRP14616 1297 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 ARSEP51690 589 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 GAD2Q05329 585 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 ARHGAP1Q07960 439 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 PIGHQ14442 188 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 TAF5Q15542 800 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 SLC1A5Q15758 541 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 PKN2Q16513 984 aaKnown RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 CCDC142Q17RM4 750 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 TMEM132AQ24JP5 1023 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 CYP4F22Q6NT55 531 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 DRICH1Q6PGQ1 229 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 MARK2Q7KZI7 788 aaKnown RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 ANKRD13AQ8IZ07 590 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 SLC4A11Q8NBS3 891 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 PPP2R3CQ969Q6 453 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 CDCA5Q96FF9 252 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 TMEM121Q9BTD3 319 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 DNAJB4Q9UDY4 337 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 MTO1Q9Y2Z2 717 aaKnown RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 A0A087WZ62 844 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 HBP1O60381 514 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 ITGB3P05106 788 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 FAM200BP0CF97 657 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 STAG3L1P0CL83 205 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 PSMA2P25787 234 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 PTPN7P35236 360 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 PGM1P36871 562 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 RAP1GDS1P52306 607 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 VCPP55072 806 aaKnown RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 DYNLT1P63172 113 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 GPS1Q13098 491 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 RAB6CQ53S08 254 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 PLEKHG4Q58EX7 1191 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 TFDP3Q5H9I0 405 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 FAM182AQ5T1J6 154 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 LVRNQ6Q4G3 990 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 MAMDC4Q6UXC1 1216 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 ECSITQ9BQ95 431 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 FDXACB1Q9BRP7 624 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 TRIM55Q9BYV6 548 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 RAB6CQ9H0N0 254 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 RPF1Q9H9Y2 349 aaKnown RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 PPCSQ9HAB8 311 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 SSU72Q9NP77 194 aaKnown RBP12.73□□□□□ -0.37
SHMT2-207ENST00000553837 SAYSD1Q9NPB0 183 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 TAS2R1Q9NYW7 299 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 SPATA7Q9P0W8 599 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 DCTN4Q9UJW0 460 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 TBC1D30Q9Y2I9 924 aa12.73□□□□□ -0.37
SHMT2-207ENST00000553837 POC1B-GALNT4F8VUJ3 575 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 TYROBPO43914 113 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 BANF1O75531 89 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 PABPC4LP0CB38 370 aaKnown RBP12.72□□□□□ -0.37
SHMT2-207ENST00000553837 CYP2C8P10632 490 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 KRT3P12035 628 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 ANPEPP15144 967 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 CRABP2P29373 138 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 NEK3P51956 506 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 GDF10P55107 478 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 PSMC1P62191 440 aaKnown RBP12.72□□□□□ -0.37
SHMT2-207ENST00000553837 ZBTB16Q05516 673 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 PPIL2Q13356 520 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 TTLL12Q14166 644 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-207ENST00000553837 TFDP1Q14186 410 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 SEPT7Q16181 437 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms