RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 SND1Q7KZF4 910 aaKnown RBP eCLIP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 IRF2BP2Q7Z5L9 587 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 UNC93AQ86WB7 457 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 METTL23Q86XA0 190 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 ZSWIM9Q86XI8 627 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 ARHGEF19Q8IW93 802 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 FAM71AQ8IYT1 594 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 THEM5Q8N1Q8 247 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 TMEM86AQ8N2M4 240 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 MFSD2AQ8NA29 543 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 APPL2Q8NEU8 664 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 SPATA18Q8TC71 538 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 SHC3Q92529 594 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 SEMA4DQ92854 862 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 PLPPR2Q96GM1 343 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 SCLYQ96I15 445 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 ZNF830Q96NB3 372 aaPredicted RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 PPP1R10Q96QC0 940 aaKnown RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 MMS19Q96T76 1030 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 GAD1Q99259 594 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 EIF3CQ99613 913 aaKnown RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 MIPEPQ99797 713 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 LBHD1Q9BQE6 289 aaPredicted RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 PI4K2AQ9BTU6 479 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 NHEJ1Q9H9Q4 299 aaPredicted RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 IL23AQ9NPF7 189 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 GDAP2Q9NXN4 497 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 STK39Q9UEW8 545 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 DSEQ9UL01 958 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 FAN1Q9Y2M0 1017 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 NUB1Q9Y5A7 615 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 NR2E3Q9Y5X4 410 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 TTC3P53804 2025 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 PDCD11Q14690 1871 aaKnown RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 UMODL1Q5DID0 1318 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 ZNF503-AS2A6NEH8 195 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 F8VZ95 297 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 KIF2AO00139 706 aaPredicted RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 PODXLO00592 558 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 CYB561D2O14569 222 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 EPHB6O15197 1021 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 KRT86O43790 486 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 TACC1O75410 805 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 TADA2AO75478 443 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 NDUFA10O95299 355 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 POMCP01189 267 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 VDRP11473 427 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 GZMAP12544 262 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 KRT5P13647 590 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 IBSPP21815 317 aaPredicted RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 GNL1P36915 607 aaPredicted RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 EIF4A3P38919 411 aaKnown RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 MLH1P40692 756 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 MAGEA1P43355 309 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 SCNN1GP51170 649 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 LILRA4P59901 499 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 RPS26P62854 115 aaKnown RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 CCZ1BP86790 482 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 CCZ1P86791 482 aaPredicted RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 ARID5AQ03989 594 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 FPGSQ05932 587 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 MESP2Q0VG99 397 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 KIF5AQ12840 1032 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 ELAVL2Q12926 359 aaKnown RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 GLRA4Q5JXX5 417 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 SFRP5Q5T4F7 317 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 GJB7Q6PEY0 223 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 PSRC1Q6PGN9 363 aaPredicted RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 WDR59Q6PJI9 974 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 TMEM270Q6UE05 265 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 TRIM72Q6ZMU5 477 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 SPOCD1Q6ZMY3 1216 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 HID1Q8IV36 788 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 OR6B3Q8NGW1 331 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 DPF3Q92784 378 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 LPPQ93052 612 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 TOP1MTQ969P6 601 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 TMEM176AQ96HP8 235 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 TNIP3Q96KP6 325 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 SENP8Q96LD8 212 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 ZMAT2Q96NC0 199 aaKnown RBP5.32□□□□□ -1.56
VTI1B-202ENST00000553619 CHP1Q99653 195 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 AGPAT1Q99943 283 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 TMEM175Q9BSA9 504 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 NT5C1AQ9BXI3 368 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 TSGA10Q9BZW7 698 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 ZNF518BQ9C0D4 1074 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 MIS12Q9H081 205 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 XYLT2Q9H1B5 865 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 WNT8AQ9H1J5 351 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 MIR1-1HGQ9H1L0 117 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 SNX25Q9H3E2 840 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 HAUS4Q9H6D7 363 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 KCND1Q9NSA2 647 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 CISHQ9NSE2 258 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 MIOSQ9NXC5 875 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 SIX4Q9UIU6 781 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 INTUQ9ULD6 942 aa5.32□□□□□ -1.56
VTI1B-202ENST00000553619 BARX2Q9UMQ3 279 aaPredicted RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms