RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 TACC1O75410 805 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 C4BPAP04003 597 aaKnown RBP12.54□□□□□ -0.4
SRP54-203ENST00000553544 NR3C1P04150 777 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 WARSP23381 471 aaKnown RBP12.54□□□□□ -0.4
SRP54-203ENST00000553544 BDNFP23560 247 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 LMO2P25791 158 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 ANXA13P27216 316 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 CASP4P49662 377 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 MESP2Q0VG99 397 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 NFIL3Q16649 462 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 CCDC142Q17RM4 750 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 DDX42Q86XP3 938 aaKnown RBP eCLIP12.54□□□□□ -0.4
SRP54-203ENST00000553544 FMR1NBQ8N0W7 255 aaPredicted RBP12.54□□□□□ -0.4
SRP54-203ENST00000553544 XYLT2Q9H1B5 865 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 VRTNQ9H8Y1 702 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 DNAAF2Q9NVR5 837 aaKnown RBP12.54□□□□□ -0.4
SRP54-203ENST00000553544 CFAP97Q9P2B7 532 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 CDH9Q9ULB4 789 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 NME7Q9Y5B8 376 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 CPQQ9Y646 472 aa12.54□□□□□ -0.4
SRP54-203ENST00000553544 ATXN2Q99700 1313 aaKnown RBP12.54□□□□□ -0.4
SRP54-203ENST00000553544 SETXQ7Z333 2677 aaKnown RBP12.54□□□□□ -0.4
SRP54-203ENST00000553544 FLNBO75369 2602 aaKnown RBP12.53□□□□□ -0.4
SRP54-203ENST00000553544 IGSF10Q6WRI0 2623 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 LRRIQ3A6PVS8 624 aaPredicted RBP12.53□□□□□ -0.4
SRP54-203ENST00000553544 MAPK13O15264 365 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 SH3BP5O60239 455 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 ATP2C2O75185 946 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 ZNF217O75362 1048 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 KIF20AO95235 890 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 CHRM1P11229 460 aaPredicted RBP12.53□□□□□ -0.4
SRP54-203ENST00000553544 ADH5P11766 374 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 ATICP31939 592 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 AP3M2P53677 418 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 MYL6P60660 151 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 USP46P62068 366 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 GAD2Q05329 585 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 COL28A1Q2UY09 1125 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 TDRD10Q5VZ19 366 aaKnown RBP12.53□□□□□ -0.4
SRP54-203ENST00000553544 BTBD8Q5XKL5 378 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 SDE2Q6IQ49 451 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 CCNI2Q6ZMN8 369 aaPredicted RBP12.53□□□□□ -0.4
SRP54-203ENST00000553544 GUF1Q8N442 669 aaKnown RBP12.53□□□□□ -0.4
SRP54-203ENST00000553544 ENGASEQ8NFI3 743 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 ADAMTS14Q8WXS8 1223 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 CCDC47Q96A33 483 aaKnown RBP12.53□□□□□ -0.4
SRP54-203ENST00000553544 CAMK1GQ96NX5 476 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 SYT15Q9BQS2 421 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 FAM124BQ9H5Z6 455 aaPredicted RBP12.53□□□□□ -0.4
SRP54-203ENST00000553544 ZDHHC4Q9NPG8 344 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 CRTAC1Q9NQ79 661 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 SMPD4Q9NXE4 827 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 DEC1Q9P2X7 70 aa12.53□□□□□ -0.4
SRP54-203ENST00000553544 E2F8A0AVK6 867 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 EIF4E1BA6NMX2 242 aaKnown RBP12.52□□□□□ -0.41
SRP54-203ENST00000553544 TRIM66O15016 1216 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 CALUO43852 315 aaPredicted RBP12.52□□□□□ -0.41
SRP54-203ENST00000553544 PDGFRBP09619 1106 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 GNSP15586 552 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 GNL1P36915 607 aaPredicted RBP12.52□□□□□ -0.41
SRP54-203ENST00000553544 MCCD1P59942 119 aaPredicted RBP12.52□□□□□ -0.41
SRP54-203ENST00000553544 NOP14P78316 857 aaKnown RBP12.52□□□□□ -0.41
SRP54-203ENST00000553544 DLG4P78352 724 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 CYP27A1Q02318 531 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 KDSRQ06136 332 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 TRPC3Q13507 836 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 PLEKHG6Q3KR16 790 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 WDR72Q3MJ13 1102 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 ZCWPW2Q504Y3 356 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 LY6G5CQ5SRR4 150 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 C1orf220Q5T0J3 134 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 SYCP2LQ5T4T6 812 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 C12orf40Q86WS4 652 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 ZNF513Q8N8E2 541 aaPredicted RBP12.52□□□□□ -0.41
SRP54-203ENST00000553544 PNPLA1Q8N8W4 532 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 TRIML1Q8N9V2 468 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 OR2I1PQ8NGU4 316 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 TMC2Q8TDI7 906 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 SYAP1Q96A49 352 aaPredicted RBP12.52□□□□□ -0.41
SRP54-203ENST00000553544 OTUB2Q96DC9 234 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 SLITRK1Q96PX8 696 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 MMS19Q96T76 1030 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 MRPL45Q9BRJ2 306 aaKnown RBP12.52□□□□□ -0.41
SRP54-203ENST00000553544 TTLL2Q9BWV7 592 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 APOBEC2Q9Y235 224 aaKnown RBP12.52□□□□□ -0.41
SRP54-203ENST00000553544 ASXL3Q9C0F0 2248 aa12.52□□□□□ -0.41
SRP54-203ENST00000553544 SCAMP3O14828 347 aaKnown RBP12.51□□□□□ -0.41
SRP54-203ENST00000553544 IKBKBO14920 756 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 NDUFS2O75306 463 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 VNN1O95497 513 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 OLFM2O95897 454 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 OAS1P00973 400 aaKnown RBP12.51□□□□□ -0.41
SRP54-203ENST00000553544 FTH1P19P0C7X4 201 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 MBL2P11226 248 aaPredicted RBP12.51□□□□□ -0.41
SRP54-203ENST00000553544 GABRG2P18507 467 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 NTSR1P30989 418 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 PSMC1P62191 440 aaKnown RBP12.51□□□□□ -0.41
SRP54-203ENST00000553544 ENPEPQ07075 957 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 TAF10Q12962 218 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 ZACNQ401N2 412 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms