RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 TRIM68Q6AZZ1 485 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 CC2D1AQ6P1N0 951 aaPredicted RBP14.81□□□□□ -0.04
PTCH1-226ENST00000553011 SCUBE3Q8IX30 993 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 SCML4Q8N228 414 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 ARHGAP18Q8N392 663 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 TTC8Q8TAM2 541 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 STK32AQ8WU08 396 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 DNASE1L2Q92874 299 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 CPXM1Q96SM3 734 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 FAM83CQ9BQN1 747 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 PDCL3Q9H2J4 239 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 HEBP1Q9NRV9 189 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 THG1LQ9NWX6 298 aaKnown RBP14.81□□□□□ -0.04
PTCH1-226ENST00000553011 CFAP97Q9P2B7 532 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 WNT6Q9Y6F9 365 aa14.81□□□□□ -0.04
PTCH1-226ENST00000553011 PAPSS1O43252 624 aaPredicted RBP14.8□□□□□ -0.04
PTCH1-226ENST00000553011 FBXO21O94952 628 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 IRF1P10914 325 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 ARSAP15289 507 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 CHRNB2P17787 502 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 ACADSBP45954 432 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 PLCB2Q00722 1185 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 EFEMP1Q12805 493 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 MLF2Q15773 248 aaPredicted RBP14.8□□□□□ -0.04
PTCH1-226ENST00000553011 BSPRYQ5W0U4 402 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 BTBD8Q5XKL5 378 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 KLHDC10Q6PID8 442 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 RSRC2Q7L4I2 434 aaKnown RBP14.8□□□□□ -0.04
PTCH1-226ENST00000553011 TMEM110Q86TL2 294 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 MIB1Q86YT6 1006 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 ZNF276Q8N554 614 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 CSGALNACT1Q8TDX6 532 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 OSCP1Q8WVF1 389 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 IRGQQ8WZA9 623 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 BAP1Q92560 729 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 EDEM1Q92611 657 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 PBXIP1Q96AQ6 731 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 LRFN3Q9BTN0 628 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 KLF16Q9BXK1 252 aaPredicted RBP14.8□□□□□ -0.04
PTCH1-226ENST00000553011 XPO4Q9C0E2 1151 aaKnown RBP14.8□□□□□ -0.04
PTCH1-226ENST00000553011 TTYH3Q9C0H2 523 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 LINC00597Q9H2U6 94 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 EBF3Q9H4W6 596 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 TRPV5Q9NQA5 729 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 HPS4Q9NQG7 708 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 DUS2Q9NX74 493 aaKnown RBP14.8□□□□□ -0.04
PTCH1-226ENST00000553011 GTSE1Q9NYZ3 720 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 RASAL2Q9UJF2 1139 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 DNMT3LQ9UJW3 386 aa14.8□□□□□ -0.04
PTCH1-226ENST00000553011 PRR33A8MZF0 331 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 LTFP02788 710 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 SOX9P48436 509 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 IFNAR2P48551 515 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 FMO1Q01740 532 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 CDR2Q01850 454 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 PTPN20Q4JDL3 420 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 TPRG1Q6ZUI0 275 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 TADA2BQ86TJ2 420 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 DDX42Q86XP3 938 aaKnown RBP eCLIP14.79□□□□□ -0.04
PTCH1-226ENST00000553011 TMEM35BQ8NCS4 154 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 FLCNQ8NFG4 579 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 PIWIL1Q96J94 861 aaKnown RBP14.79□□□□□ -0.04
PTCH1-226ENST00000553011 PPP1R13BQ96KQ4 1090 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 CDK5RAP1Q96SZ6 601 aaKnown RBP14.79□□□□□ -0.04
PTCH1-226ENST00000553011 MFSD1Q9H3U5 465 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 TBC1D17Q9HA65 648 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 CACNA1IQ9P0X4 2223 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 CEP83Q9Y592 693 aa14.79□□□□□ -0.04
PTCH1-226ENST00000553011 OTOL1A6NHN0 477 aaPredicted RBP14.78□□□□□ -0.04
PTCH1-226ENST00000553011 SHISA7A6NL88 538 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 LRRC53A6NM62 1247 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 ERBB2P04626 1255 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 CD72P21854 359 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 CDH5P33151 784 aaPredicted RBP14.78□□□□□ -0.04
PTCH1-226ENST00000553011 NOMO3P69849 1222 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 PRKCQQ04759 706 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 RUNX3Q13761 415 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 PDGFRLQ15198 375 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 EML3Q32P44 896 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 NAA35Q5VZE5 725 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 E4F1Q66K89 784 aaPredicted RBP14.78□□□□□ -0.04
PTCH1-226ENST00000553011 CWF19L1Q69YN2 538 aaKnown RBP14.78□□□□□ -0.04
PTCH1-226ENST00000553011 BMP8AQ7Z5Y6 402 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 ZNF677Q86XU0 584 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 FAM149B1Q96BN6 582 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 NOX5Q96PH1 765 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 ABCC13Q9NSE7 274 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 MARCH2Q9P0N8 246 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 SH3BP1Q9Y3L3 701 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 PIAS3Q9Y6X2 628 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 MUC6Q6W4X9 2439 aa14.78□□□□□ -0.04
PTCH1-226ENST00000553011 MYO18AQ92614 2054 aaKnown RBP14.78□□□□□ -0.04
PTCH1-226ENST00000553011 SLC12A8A0AV02 714 aa14.77□□□□□ -0.05
PTCH1-226ENST00000553011 E2F8A0AVK6 867 aa14.77□□□□□ -0.05
PTCH1-226ENST00000553011 STK25O00506 426 aa14.77□□□□□ -0.05
PTCH1-226ENST00000553011 LSM8O95777 96 aaKnown RBP14.77□□□□□ -0.05
PTCH1-226ENST00000553011 FYNP06241 537 aa14.77□□□□□ -0.05
PTCH1-226ENST00000553011 HMBSP08397 361 aa14.77□□□□□ -0.05
PTCH1-226ENST00000553011 FERP16591 822 aa14.77□□□□□ -0.05
PTCH1-226ENST00000553011 KPNA1P52294 538 aaPredicted RBP14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms