RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 SLFN14P0C7P3 912 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 NTSR1P30989 418 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 PTGER3P43115 390 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 AFMP43652 599 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 ME1P48163 572 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 GOLGA8FQ08AF8 430 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 GOLGA8DPQ0D2H9 430 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 ANO4Q32M45 955 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 KLHDC10Q6PID8 442 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 SCARA5Q6ZMJ2 495 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 ACOT1Q86TX2 421 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 TMEM25Q86YD3 366 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 PGBD3Q8N328 593 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 ZMIZ2Q8NF64 920 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 CEP76Q8TAP6 659 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 SLC2A14Q8TDB8 520 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 PNPLA8Q9NP80 782 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 CYLDQ9NQC7 956 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 MARK1Q9P0L2 795 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 PILRBQ9UKJ0 227 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 PCDH15Q96QU1 1955 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 TMEM8BA6NDV4 472 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 CACNG3O60359 315 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 GREM1O60565 184 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 ZNF217O75362 1048 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 CLSTN1O94985 981 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 ASS1P00966 412 aaKnown RBP13.58□□□□□ -0.24
PTCH1-218ENST00000548945 MYL1P05976 194 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 FAM200BP0CF97 657 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 ZSCAN22P10073 491 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-218ENST00000548945 CCDC130P13994 396 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 HOXB2P14652 356 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 ATP5C1P36542 298 aaKnown RBP13.58□□□□□ -0.24
PTCH1-218ENST00000548945 ANP32AP39687 249 aaKnown RBP13.58□□□□□ -0.24
PTCH1-218ENST00000548945 NDST1P52848 882 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 STK4Q13043 487 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 DUOXA1Q1HG43 343 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 C10orf76Q5T2E6 689 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 GRAMD4Q6IC98 578 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 UNQ6494/PRO21346Q6UXR6 183 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 NAT16Q8N8M0 369 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 KDF1Q8NAX2 398 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-218ENST00000548945 KIAA0895Q8NCT3 520 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 SNX21Q969T3 373 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 XPO6Q96QU8 1125 aaKnown RBP13.58□□□□□ -0.24
PTCH1-218ENST00000548945 KLF16Q9BXK1 252 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-218ENST00000548945 KCTD10Q9H3F6 313 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 SLC32A1Q9H598 525 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 TMEM74BQ9NUR3 256 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 EXOC1Q9NV70 894 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 WDR35Q9P2L0 1181 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 LSM7Q9UK45 103 aaKnown RBP13.58□□□□□ -0.24
PTCH1-218ENST00000548945 CFAP45Q9UL16 551 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 CIZ1Q9ULV3 898 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-218ENST00000548945 SCML2Q9UQR0 700 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 PCDHA5Q9Y5H7 936 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 NBEAQ8NFP9 2946 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 FREM2Q5SZK8 3169 aa13.58□□□□□ -0.24
PTCH1-218ENST00000548945 A0A1W2PQF6 199 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 MAPK13O15264 365 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 ZBTB24O43167 697 aaPredicted RBP13.57□□□□□ -0.24
PTCH1-218ENST00000548945 BEST1O76090 585 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 F13A1P00488 732 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 NR3C1P04150 777 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 ENGP17813 658 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 GABRG2P18507 467 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 ASPAP45381 313 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 MAP3K7CLP57077 242 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 ENPEPQ07075 957 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 INCA1Q0VD86 236 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 FOXC1Q12948 553 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 UAP1L1Q3KQV9 507 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 SDE2Q6IQ49 451 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 SV2AQ7L0J3 742 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 ARMCX6Q7L4S7 300 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 ZNF276Q8N554 614 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 FRMD1Q8N878 549 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 WBP2Q969T9 261 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 HNRNPABQ99729 332 aaKnown RBP13.57□□□□□ -0.24
PTCH1-218ENST00000548945 CD248Q9HCU0 757 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 ZDHHC4Q9NPG8 344 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.57□□□□□ -0.24
PTCH1-218ENST00000548945 DNAJC17Q9NVM6 304 aaKnown RBP13.57□□□□□ -0.24
PTCH1-218ENST00000548945 CALCOCO1Q9P1Z2 691 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 USP25Q9UHP3 1055 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 HCN2Q9UL51 889 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 SLC6A14Q9UN76 642 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 FRMD4BQ9Y2L6 1034 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 ITPR1Q14643 2758 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 KNL1Q8NG31 2342 aa13.57□□□□□ -0.24
PTCH1-218ENST00000548945 GFRA2O00451 464 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 ACTN4O43707 911 aaKnown RBP13.56□□□□□ -0.24
PTCH1-218ENST00000548945 SERPINF2P08697 491 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 IRF1P10914 325 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 TYRP14679 529 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 ITPKAP23677 461 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 PGFP49763 221 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 PSEN1P49768 467 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 DLG4P78352 724 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 RPL6Q02878 288 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms