RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PGDP52209 483 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 HNRNPMP52272 730 aaKnown RBP eCLIP4.8□□□□□ -1.64
VPS29-205ENST00000548539 NSUN2Q08J23 767 aaKnown RBP eCLIP4.8□□□□□ -1.64
VPS29-205ENST00000548539 TP53BP2Q13625 1128 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 CERCAMQ5T4B2 595 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 SFRP4Q6FHJ7 346 aaPredicted RBP4.8□□□□□ -1.64
VPS29-205ENST00000548539 COLGALT2Q8IYK4 626 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 FAM109AQ8N4B1 249 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 C11orf44Q8N8P7 122 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 B3GALNT2Q8NCR0 500 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 ATRIPQ8WXE1 791 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 ATG4AQ8WYN0 398 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 RUBCNQ92622 972 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 BOD1Q96IK1 185 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 FAM227BQ96M60 508 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 HIST1H2AAQ96QV6 131 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 C17orf80Q9BSJ5 609 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 TRIM5Q9C035 493 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 AMBRA1Q9C0C7 1298 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 MLXIPQ9HAP2 919 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 INTS13Q9NVM9 706 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 RRN3Q9NYV6 651 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 TMOD4Q9NZQ9 345 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 DNAJB11Q9UBS4 358 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 J3KTA2 159 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 DNPH1O43598 174 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 SH3BP5O60239 455 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 SPDEFO95238 335 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 RHOP08100 348 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 AKT1P31749 480 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 UQCRC1P31930 480 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 MPLP40238 635 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 ZNF81P51508 661 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 PPFIA1Q13136 1202 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 CCNIQ14094 377 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 SF3B3Q15393 1217 aaKnown RBP4.79□□□□□ -1.64
VPS29-205ENST00000548539 ABLIM2Q6H8Q1 611 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 MZT2AQ6P582 158 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 KLHL17Q6TDP4 642 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 RASGRP3Q8IV61 690 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 ABRAQ8N0Z2 381 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 GALNT15Q8N3T1 639 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 PAF1Q8N7H5 531 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 Q8N9P0 234 aaPredicted RBP4.79□□□□□ -1.64
VPS29-205ENST00000548539 STT3BQ8TCJ2 826 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 SSH3Q8TE77 659 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 OSCP1Q8WVF1 389 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 LPIN2Q92539 896 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 GCC1Q96CN9 775 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 OSBPL9Q96SU4 736 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 FAM167BQ9BTA0 163 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 TMEM8AQ9HCN3 771 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 ALG13Q9NP73 1137 aaKnown RBP4.79□□□□□ -1.64
VPS29-205ENST00000548539 TMEM74BQ9NUR3 256 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 C9orf78Q9NZ63 289 aaPredicted RBP4.79□□□□□ -1.64
VPS29-205ENST00000548539 LPAR3Q9UBY5 353 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 GTF2A1LQ9UNN4 478 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 DTNAQ9Y4J8 743 aa4.79□□□□□ -1.64
VPS29-205ENST00000548539 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.79□□□□□ -1.64
VPS29-205ENST00000548539 HMX3A6NHT5 357 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 ZSCAN9O15535 394 aaPredicted RBP4.78□□□□□ -1.64
VPS29-205ENST00000548539 ITGA2BP08514 1039 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 KLRK1P26718 216 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 GATMP50440 423 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 CLCN2P51788 898 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 BCAT1P54687 386 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 ALDH18A1P54886 795 aaKnown RBP4.78□□□□□ -1.64
VPS29-205ENST00000548539 FOXO1Q12778 655 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 SLC9A4Q6AI14 798 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 CLEC9AQ6UXN8 241 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 GPR149Q86SP6 731 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 ARHGEF25Q86VW2 580 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 KRT73Q86Y46 540 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 CCDC117Q8IWD4 279 aaPredicted RBP4.78□□□□□ -1.64
VPS29-205ENST00000548539 IZUMO1Q8IYV9 350 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 SLC44A3Q8N4M1 653 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 TOR1AIP2Q8NFQ8 470 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 MYCBPAPQ8TBZ2 947 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 GLG1Q92896 1179 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 RILPL2Q969X0 211 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 PTCD3Q96EY7 689 aaKnown RBP4.78□□□□□ -1.64
VPS29-205ENST00000548539 VPS51Q9UID3 782 aa4.78□□□□□ -1.64
VPS29-205ENST00000548539 HERC5Q9UII4 1024 aaKnown RBP4.78□□□□□ -1.64
VPS29-205ENST00000548539 IRAK2O43187 625 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 SNX2O60749 519 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 ACTL6BO94805 426 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 GLP2RO95838 553 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 VIPP01282 170 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 EGR2P11161 476 aaPredicted RBP4.77□□□□□ -1.65
VPS29-205ENST00000548539 ITGAMP11215 1152 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 HSD3B1P14060 373 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 MTHFSP49914 203 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 PNLIPRP1P54315 467 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 FHL3Q13643 280 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 ATP1A4Q13733 1029 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 GRM4Q14833 912 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 BTBD16Q32M84 506 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 ALFQ53S48 1182 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 RINT1Q6NUQ1 792 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 MAVSQ7Z434 540 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms